PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr003750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bZIP | ||||||||
Protein Properties | Length: 242aa MW: 27182.4 Da PI: 10.1789 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.4 | 3.5e-09 | 40 | 96 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s Pbr003750.1 40 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 96 9*****************************************998877666665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-16 | 36 | 100 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.737 | 38 | 101 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-9 | 40 | 97 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-10 | 40 | 95 | No hit | No description |
SuperFamily | SSF57959 | 5.06E-11 | 40 | 91 | No hit | No description |
CDD | cd14703 | 8.24E-22 | 41 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSARPRHRHS NSVDASLDSI EAKKAMAPDK LAELWTVDPK RAKRILANRQ SAARSKERKA 60 RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLSSENTE LKLRVQAMEQ QAQLRDALND 120 ALKKELERLK VATGEQLTHT DSYNLGMHHF PYSQSPFFPS QSQPGSRDSQ NIHMPQFHQF 180 QPNMSAPHQP MLGSSQSHAC LDMSQQDPIG RFQGLDINNR GSHLVRPEGP SISAGESNRR 240 F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr003750.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009349073.1 | 1e-176 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 4e-87 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A498KSN4 | 1e-165 | A0A498KSN4_MALDO; Uncharacterized protein | ||||
STRING | XP_009349073.1 | 1e-176 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 2e-87 | bZIP family protein |
Publications ? help Back to Top | |||
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