PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003636.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 532aa    MW: 58879.6 Da    PI: 6.6291
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003636.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.9e-11250306155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Pbr003636.1 250 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 306
                  57*******************4444.2344336655.7799999*************98 PP
2AP249.88.5e-16349400155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Pbr003636.1 349 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 400
                  57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-8250306IPR001471AP2/ERF domain
CDDcd000182.12E-19250316No hitNo description
SuperFamilySSF541711.18E-14250316IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-12251315IPR001471AP2/ERF domain
SMARTSM003801.8E-22251320IPR001471AP2/ERF domain
PROSITE profilePS5103217.346251314IPR001471AP2/ERF domain
PRINTSPR003674.5E-6252263IPR001471AP2/ERF domain
PfamPF008473.6E-10349400IPR001471AP2/ERF domain
CDDcd000181.58E-11349408No hitNo description
SuperFamilySSF541719.81E-18349409IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-18350408IPR001471AP2/ERF domain
SMARTSM003807.9E-31350414IPR001471AP2/ERF domain
PROSITE profilePS5103219.111350408IPR001471AP2/ERF domain
PRINTSPR003674.5E-6390410IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAPASNWLSF SLMSPMEMLR SSESDQSPFV PYDASSTASP HYFLDNFYAS NGWPTNPKSQ  60
VFFEDGEDQS KQQGQSGSPN PSPFVDPQSH TQHIPKLEDF LGDSSSMVRY SDSQTETQGS  120
SSLTHIYDQS SAYFGGDQHQ HQHQHRHQED LKAITGFQAF STNSGSEMED SASMARTTQQ  180
QQLACAEFAG HSIESTGNEL GVYNSSCAAN ALSLGVTTTT QSSSDQKKAI VGVDNDSSKK  240
IADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE DKAARAYDLA  300
ALKYWGPTAT TNFPVSTYSK ELEDMKHVTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ  360
GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIGKS  420
SLPVGGAAKR LKLSLEAEEQ KPSVNHDQQH PQCSSGNINF TAMQPVQSIP CGIPYDAAAA  480
NAYYHNLFHQ LQPNYYGALD SAGLNPNIAT QMNMMPQQPA EFYIWPNHQS H*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003636.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364241.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A498KJK50.0A0A498KJK5_MALDO; Uncharacterized protein
STRINGXP_009364241.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]