PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr003628.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Dof | ||||||||
Protein Properties | Length: 388aa MW: 40942 Da PI: 8.5693 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.2e-39 | 42 | 101 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk Pbr003628.1 42 PEQALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKI 101 6899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.5E-33 | 44 | 100 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-28 | 45 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.432 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010052 | Biological Process | guard cell differentiation | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1902066 | Biological Process | regulation of cell wall pectin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MMSSDAAQPA KPKDDENPTG GSGGSRPKTT SSSSSGPKLP PPEQALKCPR CDSPNTKFCY 60 YNNYSLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKK IRRSSSSSNS RLSCSFDSSK 120 DSAGSSSSEN MMLGGLKFFH GISPAMDFQL GSISRLHNNN QFSSNPAAGI NFNNPFSAFG 180 DVSGTSGLNI STLEPSAGGG TNACNNSFLG FNYPLTLGGG GGGASGSGGL ISTQNMMSAM 240 NVHSSLASSI ESLSSINQDL HWKMQQQRLA MLIGTEEHDQ STHSTQSQLE NQQKTQQMIT 300 PISLFQNLEV SSSSKPDHHQ GVNHGRKEGG DTATEWFFGN TYAAPVTPTP TNSGGGGGAG 360 GNENASNWPH GIPAWSSHDL QQYNALP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr003628.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364234.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.7-like | ||||
TrEMBL | A0A498KI06 | 0.0 | A0A498KI06_MALDO; Uncharacterized protein | ||||
STRING | XP_009364234.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 2e-44 | Dof family protein |