PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003518.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bZIP

Protein Properties

Length: 514aa MW: 56421 Da PI: 6.4603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003518.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	209	250	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L Pbr003518.1 209 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 250 6889*************************9777777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.7E-7	205	252	No hit	No description
SMART	SM00338	7.7E-7	206	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	208	252	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-8	209	251	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.0E-6	210	252	No hit	No description
PROSITE pattern	PS00036	0	213	228	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-32	291	366	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MAASHRVGDA TAATPTATTA GLSSELGPSN HHVPYAVLHG MNASSTSFIN QEGSAFDFGE 60 LEEAIARQVR NDEAQAPLFT GGGGAGRPAA TLEMFPSWPM RFHQTPGGSS KSGEEESTDS 120 GSQVNTLTTT TTTTTNQLEL EPESPMSKNP SSSQAAFDQK HLQFQQQQQQ QEMAISDTGP 180 NSQTPSAQKP SQEKRKGAGS TSENKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR 240 IKLTQLEQDL QRARAQGLFL GGCGGGLGNI SSGAAIFDME YARWLEDDHR HMSELRTGLQ 300 AHLSDSDLRL VVDGYVSHYD EIFQLKGMAA KSDVFHLITG MWTTPAERCF LWMGGFRPSE 360 LIKMLIAQLD PLTEQQFMGI YNLQQSSQQG EEALTQGLEQ LHQSLVDTIA GGPVIDGMQQ 420 MAVALGKLTN LEGFVRQADN LRQQTLHQLR RILTVRQAAR CFLVIGEYYG RLRALSSLWA 480 SRPRETMISD DNSCQTTTDL QMLHPSQNHF ASF*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MAASHRVGDA TAATPTATTA GLSSELGPSN HHVPYAVLHG MNASSTSFIN QEGSAFDFGE  60
LEEAIARQVR NDEAQAPLFT GGGGAGRPAA TLEMFPSWPM RFHQTPGGSS KSGEEESTDS  120
GSQVNTLTTT TTTTTNQLEL EPESPMSKNP SSSQAAFDQK HLQFQQQQQQ QEMAISDTGP  180
NSQTPSAQKP SQEKRKGAGS TSENKQLDAK TLRRLAQNRE AARKSRLRKK AYVQQLESSR  240
IKLTQLEQDL QRARAQGLFL GGCGGGLGNI SSGAAIFDME YARWLEDDHR HMSELRTGLQ  300
AHLSDSDLRL VVDGYVSHYD EIFQLKGMAA KSDVFHLITG MWTTPAERCF LWMGGFRPSE  360
LIKMLIAQLD PLTEQQFMGI YNLQQSSQQG EEALTQGLEQ LHQSLVDTIA GGPVIDGMQQ  420
MAVALGKLTN LEGFVRQADN LRQQTLHQLR RILTVRQAAR CFLVIGEYYG RLRALSSLWA  480
SRPRETMISD DNSCQTTTDL QMLHPSQNHF ASF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003518.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC770002	1e-179	KC770002.1 Pyrus pyrifolia microsatellite TXY004 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364312.1	0.0	PREDICTED: transcription factor TGA2.2-like
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A498KBI7	0.0	A0A498KBI7_MALDO; Uncharacterized protein
STRING	XP_009364312.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]