PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003296.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 303aa    MW: 32002 Da    PI: 9.5736
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003296.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08106131227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +     Ck+Gd+C+FaHg+
  Pbr003296.1 106 KTRLCNKYNTVEGCKFGDKCHFAHGE 131
                  8*********99************96 PP
2zf-CCCH36.39.1e-12269294127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC +f + GtC +GdrC+FaHg+
  Pbr003296.1 269 FKTKLCENFTK-GTCTFGDRCHFAHGQ 294
                  69*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423967IPR000571Zinc finger, CCCH-type
SMARTSM003561.73966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-74164IPR000571Zinc finger, CCCH-type
PfamPF146081.84764No hitNo description
Gene3DG3DSA:4.10.1000.104.4E-14102135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8102135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.507104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018104131IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.68E-14166246IPR004088K Homology domain, type 1
SMARTSM003228.3E-10174244IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.2E-14174244IPR004088K Homology domain, type 1
PROSITE profilePS5008413.565175239IPR004088K Homology domain, type 1
CDDcd001056.89E-13177239No hitNo description
PfamPF000133.2E-10177241IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.108.6E-17266299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-9267298IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-8268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.206268295IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9269294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFGGGGRKR GRPEAGHFNG NGGFKKSKPE MESFQPGIGS KSKPCTKFFS TSGCPFGEGC  60
HFLHYVPGGI KAVSQMTGSN PTHPPPPRNS AAPPSFPDGS SPPTVKTRLC NKYNTVEGCK  120
FGDKCHFAHG EWELGRPTAQ SYEDPRAGGG FSGRMGGRME PPPPAHGAVA SFGATATAKI  180
SVDASLAGAI IGKNGVHSKQ ICRVTGAKLS IREHETDHKL RNIELEGTLD QIKDASAMVR  240
ELIGNVSSGA GTHNMRNPAI SASSPASNFK TKLCENFTKG TCTFGDRCHF AHGQEELRRS  300
AM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936045e-51FQ393604.1 Vitis vinifera clone SS0AFA25YC11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364071.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-115C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498K8X90.0A0A498K8X9_MALDO; Uncharacterized protein
STRINGXP_009364071.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-54C3H family protein