PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr002946.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 186aa MW: 20116.7 Da PI: 5.5682

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr002946.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106	3.1e-33	18	104	14	100
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqq++++l+ael+++++e Pbr002946.1 18 XECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAISALQQEVQSLQAELNAVRDE 104 58********************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.853	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.9E-33	18	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MPLLSLXXXX XXXXXXXXEC PFSPYFSPHE PQKFASVHKV FGASNVSKML MEVPETQRAD 60 AANSLVYEAN VRLRDPVYGC MGAISALQQE VQSLQAELNA VRDEILKCKY REANLLPSNS 120 HHMALFSTSG AVSAASLPQT PQPTPPPPPP PPMPPTSSSS SMYTNQQTSA ADYSSLSSEN 180 VSFFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-36	20	118	26	124	LOB family transfactor Ramosa2.1
5ly0_B	4e-36	20	118	26	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr002946.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009363833.1	1e-118	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_009363834.1	1e-118	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504565.1	1e-118	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504566.1	1e-118	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504567.1	1e-118	PREDICTED: LOB domain-containing protein 15-like
Refseq	XP_018504568.1	1e-118	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-53	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A498JI09	4e-92	A0A498JI09_MALDO; Uncharacterized protein
STRING	XP_009363833.1	1e-118	(Pyrus x bretschneideri)
STRING	XP_009363848.1	1e-118	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	9e-55	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]