PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002620.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HB-other
Protein Properties Length: 366aa    MW: 41274.8 Da    PI: 4.2237
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002620.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-09299346653
                  S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
     Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                  +++k q+e+Le++++k++ p+ ++   + + ++L+ ++V  WF  +R 
  Pbr002620.1 299 RLKKAQVETLESVYRKTKRPTNAMVSSIVHVTNLPRKRVVKWFEDKRS 346
                  67899****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.058291351IPR001356Homeobox domain
CDDcd000861.80E-6297345No hitNo description
SMARTSM003892.8E-4297355IPR001356Homeobox domain
SuperFamilySSF466893.12E-9297351IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-9298347IPR009057Homeodomain-like
PfamPF000464.5E-7299346IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAFASALNTP KGLHFLPLPS SFRERPPTNL ELPRHFPTRF SSTLALARRR NHRAEVAPSK  60
TKMKKKILGQ KEVKEAEVEE EDVDEDAIDA LFRLLEEDLK NDGASFDGED LTEEELSKLE  120
QEVAEALGID GDDDVDDDDD DDEEEDDDDD DVVVESYAEE EEEEEEEEED DDDDDEDEEE  180
EEDEGPVKLK TWQLRRLAAA LKVGRRKTSI KTLAAELCLD RAVVLELLRE PPPSLLMMCA  240
ALPDEPATVI SVSQTKSVEA VVETTRETVV ETATDSVKLE PAVKVPVHVR QQKFSAQKRL  300
KKAQVETLES VYRKTKRPTN AMVSSIVHVT NLPRKRVVKW FEDKRSEEGV PDSRVPYQRP  360
APNTV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501249.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3-like
TrEMBLA0A498HQ700.0A0A498HQ70_MALDO; Uncharacterized protein
STRINGXP_008352054.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101813138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.17e-56overexpressor of cationic peroxidase 3