PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002526.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 369aa    MW: 41751.4 Da    PI: 7.4409
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002526.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.5e-54111411129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++  
  Pbr002526.1  11 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLP 107
                  69****************************.9***************952444443456*************************************** PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++ +g++ktLvfy+grap+g+ktdW+mheyrle
  Pbr002526.1 108 NSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLE 141
                  ********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-613163IPR003441NAC domain
PROSITE profilePS5100558.43211163IPR003441NAC domain
PfamPF023656.0E-2812140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMAAGNGQLT VPPGFRFHPT DEELLYYYLR KKVSYEAIDL DVIREVDLNK LEPWDLKEKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLPNSK RIGMRKTLVF  120
YTGRAPHGQK TDWIMHEYRL EDDNTNADQV QEDGWVVCRV FKKNHNRGYL PEFAHQDHRE  180
HDHFTNMKAS GSHVPILLDH YDHHQQKQNH HHLEGLYNYP SSFDHAGSMH LPQLFSPESA  240
VAASSFVSPH NINLNTMDIE CSQNLLRLTS TAAVAAAAAS GSCGLVQQQE RSFISGGDWS  300
FLDKLLASHQ NLDVNHSASQ TAKCNPSSST QQLSNSHDHD HVGTSSSTQQ RFPFQYLGCA  360
TDILKFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-52816314165NO APICAL MERISTEM PROTEIN
1ut4_B4e-52816314165NO APICAL MERISTEM PROTEIN
1ut7_A4e-52816314165NO APICAL MERISTEM PROTEIN
1ut7_B4e-52816314165NO APICAL MERISTEM PROTEIN
3swm_A5e-52816617171NAC domain-containing protein 19
3swm_B5e-52816617171NAC domain-containing protein 19
3swm_C5e-52816617171NAC domain-containing protein 19
3swm_D5e-52816617171NAC domain-containing protein 19
3swp_A5e-52816617171NAC domain-containing protein 19
3swp_B5e-52816617171NAC domain-containing protein 19
3swp_C5e-52816617171NAC domain-containing protein 19
3swp_D5e-52816617171NAC domain-containing protein 19
4dul_A4e-52816314165NAC domain-containing protein 19
4dul_B4e-52816314165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002526.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363295.10.0PREDICTED: protein SOMBRERO
SwissprotQ9MA171e-127SMB_ARATH; Protein SOMBRERO
TrEMBLA0A498JZN20.0A0A498JZN2_MALDO; Uncharacterized protein
STRINGXP_009363295.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-119NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]