PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002501.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 337aa MW: 37773.3 Da PI: 6.0364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl Pbr002501.1 13 RGLWSPEEDEKLLNHINTFGHGSWSSVPKLAGLERCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++ E+ +vd+++ lG++ W+ Ia++++ gRt++++k++w++ Pbr002501.1 66 RGPFSEIEERTIVDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.784 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.54E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 24.415 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.99E-11 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGHHCCSKQK IKRGLWSPEE DEKLLNHINT FGHGSWSSVP KLAGLERCGK SCRLRWINYL 60 RPDLKRGPFS EIEERTIVDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGF 120 DPNTHNLLPS SKANPSNINN NNNNIHACNM FSPSSFFSVN SSHVSADTSI DILEAPYLTL 180 PSTSSPHTNH VDISLHERST ISTCEFQNPN MVWSTTLVQE QINPIVLTEF MGINNVPTIS 240 TSHSYPISEL ENIVNESFQP ITKSTNPKDM LLQSQQEEAC EVVENENPSV LNGAQTNIDA 300 SFGSSNFDLD FMESTELPCG MYNYQPSPMD QLTWNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002501.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009363274.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
TrEMBL | A0A498JUP9 | 0.0 | A0A498JUP9_MALDO; Uncharacterized protein | ||||
STRING | XP_009363274.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 3e-81 | myb domain protein 67 |