PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002461.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 811aa    MW: 92637.9 Da    PI: 7.9889
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002461.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.71.1e-1959145390
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y +Y+ + GF+vrk++ k++ + g + + t+vCsk+g+r++++k+ e+   + +++r+gC+a+++  ++k+gk+++++++  HnH+l 
  Pbr002461.2  59 YVKYGAKHGFDVRKHHRKTN-KMGLVSRVTYVCSKQGHRRKDNKRCESITYSLPSSRVGCEAHMVCLLTKTGKFKIISFNASHNHDLI 145
                  99***********9887766.7778********************999999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-1659145IPR004330FAR1 DNA binding domain
PfamPF105519.2E-32267361IPR018289MULE transposase domain
PROSITE profilePS509669.656536581IPR007527Zinc finger, SWIM-type
SMARTSM005758.3E-6556583IPR006564Zinc finger, PMZ-type
PfamPF044347.1E-4557581IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MEKNDCIRLS SESLSGEEVD LQGNGSSLRS NDPDKVEEMT EDLKLGIEFS SHDSAYVAYV  60
KYGAKHGFDV RKHHRKTNKM GLVSRVTYVC SKQGHRRKDN KRCESITYSL PSSRVGCEAH  120
MVCLLTKTGK FKIISFNASH NHDLIKAPMK HMLKVNRCLS RAQKGHVADG EKSRSPIKET  180
VELVSREVEG QENLGSGDND YRNYLQRKRK LKMEKGDAGA ILQYFQNMRE DNSSCFYSVQ  240
LDEDDRITNI FWADARSVCD YKAFGDVVCF DTTYQINEYG RPFAPLIGVN HHKQIVVFGA  300
ALLYDDSRDS FKWLFETFLA AMSGKQPKTI LTDQSAAMAE AILEVFPEAN HQLCAWHIYQ  360
KAAKNLSHVF HASKQFACDL SKCVYEYEDK DAWLSAWNDM LENYDLKEDN WLKEIYEVRE  420
KWALVYERHT FTADLMSIQH KESITNVLKK HLMPSHDLLC FFEHFENILA DRRDKELQAD  480
FKMMQTVPSP VINVEMLERA VEVYTPEVFR LFEKEYMGIL NCSVYKIGKS GTTSEYKVSY  540
RSHEHLVKYD GSTHAVNCSC MKFTFVGILC SHALKVLDKK NVKTIPPDYI LKRWTRGARD  600
RSLTIYHGIE TSNNPRESPG KRYSHLCHNF REIASLAAED ERLTACAHDW SVQLLKSLEE  660
MKKNLGLDNV PVHKNSEGEA LVGESGGTKQ VKMVKHNDCE ITKERGVKRK YTAKCPCSRL  720
TEPAETQKHI PPTKGTQYAA RHWLLEGTLP FTQHRQGSYV DNGNQVSYSS KTFGATPSFL  780
SNMHFTQLCQ EPSRHHNHCS QSNGGKESGN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002461.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378036.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_009378028.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-121FAR1-related sequence 5