PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr002358.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 803aa MW: 88570.8 Da PI: 9.3215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr002358.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.6e-16	588	634	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Pbr002358.2 588 VHNLSERRRRDRINEKMRALQELIPQS-----NKTDKASMLDEAIEYLKSLQ 634 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.20.20.100	3.6E-33	69	236	IPR023210	NADP-dependent oxidoreductase domain
SuperFamily	SSF51430	2.62E-32	72	236	IPR023210	NADP-dependent oxidoreductase domain
Pfam	PF00248	3.5E-24	74	236	IPR023210	NADP-dependent oxidoreductase domain
CDD	cd06660	1.53E-30	74	295	IPR023210	NADP-dependent oxidoreductase domain
SuperFamily	SSF47459	4.32E-20	582	650	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.266	584	633	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.37E-17	587	638	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.3E-20	588	642	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-13	588	634	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-17	590	639	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence Send to blast
MKTNVYTPWT MSLFTPKSSV PALQSSILHP TITTYFFHSS LISRKSLSPP LQVSLEFEVL 60 KLRKPHFQKN RKMKAAKAAF DVSVDGGITF FDTAEVYGSR MRKASYSSSI KFVAVKTNSS 120 LSTLAAALKD SLSRLELSSV ELYQLHWPGV WGNEGYLGLG GLGDSVEQGL VTAVGVSNYS 180 KKRLRKAHAK LQKTGIPPAS NQVNYSLIYR APEENGVKST CDELGSTLIA YSPIAQVSCC 240 PPSSPHNLAH TKRGGERKRS AFHNSSFELI LNFCLLRDMN SCIPEGNFEA DLPLTNQKKS 300 MGPDHELVEL LWRDGQVVLN SQTHRKPSLN PNDQPRQVQK HDQQSIRSGG SYGNSSNPIL 360 DDDTVSLIHY PLENSFDKEF CSHFFSELHS CGPIELDKPI KQFEGEKFDA SDTGRLVSNS 420 PQPNVESSAG VEYPANPMPP PRYHYINSTD QQNQNRGSGK IVNFSQFATP GKLSAGSSRG 480 QASSNCDGTT GLSAGHFYDN VHKIMPQSET GKTDTLDPTL TSSSGGSGSS FGRGGKQSNV 540 VNSNKRKVRD AEDSECQSEA AELESASAAG SKSAHRSGST RRSRAAEVHN LSERRRRDRI 600 NEKMRALQEL IPQSNKTDKA SMLDEAIEYL KSLQMQLQVM WMGSGMAPMM YPGVQHYISQ 660 MGMGPPALPA MHNPVHLPRH PLVDQCMNVA PAANQTVMCQ PPVLNPVDYH NQMQNPSFQE 720 QYARLMNFHH MQTMSQPMNM FRFGSQPVQQ NQMMAPNGLS SRPFGVGAAT NDPLSGKMSK 780 SLKSTLSHNN HFFFFFFYKK HA*

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence Send to blast

MKTNVYTPWT MSLFTPKSSV PALQSSILHP TITTYFFHSS LISRKSLSPP LQVSLEFEVL  60
KLRKPHFQKN RKMKAAKAAF DVSVDGGITF FDTAEVYGSR MRKASYSSSI KFVAVKTNSS  120
LSTLAAALKD SLSRLELSSV ELYQLHWPGV WGNEGYLGLG GLGDSVEQGL VTAVGVSNYS  180
KKRLRKAHAK LQKTGIPPAS NQVNYSLIYR APEENGVKST CDELGSTLIA YSPIAQVSCC  240
PPSSPHNLAH TKRGGERKRS AFHNSSFELI LNFCLLRDMN SCIPEGNFEA DLPLTNQKKS  300
MGPDHELVEL LWRDGQVVLN SQTHRKPSLN PNDQPRQVQK HDQQSIRSGG SYGNSSNPIL  360
DDDTVSLIHY PLENSFDKEF CSHFFSELHS CGPIELDKPI KQFEGEKFDA SDTGRLVSNS  420
PQPNVESSAG VEYPANPMPP PRYHYINSTD QQNQNRGSGK IVNFSQFATP GKLSAGSSRG  480
QASSNCDGTT GLSAGHFYDN VHKIMPQSET GKTDTLDPTL TSSSGGSGSS FGRGGKQSNV  540
VNSNKRKVRD AEDSECQSEA AELESASAAG SKSAHRSGST RRSRAAEVHN LSERRRRDRI  600
NEKMRALQEL IPQSNKTDKA SMLDEAIEYL KSLQMQLQVM WMGSGMAPMM YPGVQHYISQ  660
MGMGPPALPA MHNPVHLPRH PLVDQCMNVA PAANQTVMCQ PPVLNPVDYH NQMQNPSFQE  720
QYARLMNFHH MQTMSQPMNM FRFGSQPVQQ NQMMAPNGLS SRPFGVGAAT NDPLSGKMSK  780
SLKSTLSHNN HFFFFFFYKK HA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5dan_A	3e-16	65	234	29	201	2,5-diketo-D-gluconic acid reductase
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	592	597	ERRRRD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr002358.2

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689415	0.0	KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018507492.1	0.0	PREDICTED: transcription factor PIF4
Refseq	XP_018507495.1	0.0	PREDICTED: transcription factor PIF4
Refseq	XP_018507498.1	0.0	PREDICTED: transcription factor PIF4
TrEMBL	A0A498H8P9	0.0	A0A498H8P9_MALDO; Uncharacterized protein
STRING	XP_009376949.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8146	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.4	2e-40	phytochrome interacting factor 3-like 6