PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr002230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 35910.3 Da PI: 5.0397 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.4e-30 | 129 | 186 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh Pbr002230.1 129 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 186 79*************************998**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-30 | 114 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.971 | 123 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-25 | 125 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-33 | 128 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-25 | 130 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MENWDLQAVV RGCNSNIDEV IEDSQIPYFC APLSFQEDNE LFAAKFPQAF EVTTTLDELE 60 ELYKPFYPVF QLTTPPTILT SSISVPQEII TQAPKLIKNM EESTPVRKRI RKNQNKRVVK 120 EVKAEDLFSD VWAWRKYGQK PIKGSPYPRS YYRCSSSKGC SARKQVERSC SNPETFIITY 180 TAEHNHVHPT RRNSLAGSTR SKFPSSKNKD KCGSSSNSPA TPNIAASIED DREFVESMSI 240 NAVKVEAKLW EQDEISKEIF LLDTTVNDEI FPSFEDLDRK LEPVMDGWFS DEFSDNFPSP 300 WFNIKGHSNT VTGAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-19 | 119 | 189 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-19 | 119 | 189 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr002230.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU013683 | 4e-98 | GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009363390.1 | 0.0 | PREDICTED: probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 2e-59 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | A0A498JKS6 | 0.0 | A0A498JKS6_MALDO; Uncharacterized protein | ||||
STRING | XP_009363390.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 7e-38 | WRKY family protein |