PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002033.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 267aa    MW: 29999.9 Da    PI: 9.2156
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002033.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.3e-302171151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien s rqvtfskRrng+lKKA+ELSvLCdaevavi+fsstgklye+ss
  Pbr002033.1 21 KKIENLSSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIVFSSTGKLYEFSS 71
                 68***********************************************96 PP
2K-box51.25.2e-1810219012100
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   +a +++ +l+ L++ei +L+ +  ++ G++L+  slk+Lq+Le+qL +++  +++kK+e+l+e++++++ +e+++ ee ++Lrk+lee
  Pbr002033.1 102 MQATNSNCNLNALQNEIATLRLTCTRMTGKELDGVSLKDLQRLEDQLSEGILCVKDKKEEILMEKLKKSRLQEQKAMEESENLRKELEE 190
                  56678888999**********999**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.6181373IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-401372IPR002100Transcription factor, MADS-box
CDDcd002651.43E-401484No hitNo description
SuperFamilySSF554554.32E-321489IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001569IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-301535IPR002100Transcription factor, MADS-box
PfamPF003198.6E-272269IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-303550IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-305071IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.066104194IPR002487Transcription factor, K-box
PfamPF014864.8E-13104188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MNTENSTPAR KPLGRGRIEI KKIENLSSRQ VTFSKRRNGL LKKAKELSVL CDAEVAVIVF  60
SSTGKLYEFS STSMDHPLSR YNKGALIEHP QKERSGDNEP VMQATNSNCN LNALQNEIAT  120
LRLTCTRMTG KELDGVSLKD LQRLEDQLSE GILCVKDKKE EILMEKLKKS RLQEQKAMEE  180
SENLRKELEE MRQNKRSNWP IVVASHPLER RFSCTSSKAV SSYKAEESDH SDTSLHLGLS  240
SDVHRKRKAA KIEHNSNDSG SQVASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-2213106189MEF2C
5f28_B5e-2213106189MEF2C
5f28_C5e-2213106189MEF2C
5f28_D5e-2213106189MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640100.0KP164010.1 Pyrus pyrifolia clone PpAGL18 AGL18 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363196.10.0PREDICTED: agamous-like MADS-box protein AGL18 isoform X1
SwissprotQ9M2K85e-67AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A498I3960.0A0A498I396_MALDO; Uncharacterized protein
STRINGXP_009363196.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.15e-57AGAMOUS-like 18