PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001941.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 319aa    MW: 35257.3 Da    PI: 7.1357
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001941.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.32.3e-4043103262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Pbr001941.1  43 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 103
                  7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2941101IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3344101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.18947101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDSSDWLQGT IREDSPMDSS SPLSGDMLTC SRPLVERRLR PQHDQALKCP RCDSTHTKFC  60
YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVSSKKPNDQ SPSSLMNQHH  120
HPGSSSSSIS HIPTDLHLSF PDQMQFSHLN NLMLGSNMNP SSFMDNSNPR PIDFMESKLE  180
AIVGNARNYD FMGGGADLGM MGGYGNNMGG VSHGLDNQSS FHGICSSPFG MSSLDGQNGN  240
FMDSCQRLML PYDQANHEDH HQINAMDVKP NTKLLSLEWQ DQAGCSDLGK DSFGYLNGLG  300
SWSNVMNTYV PSTTNPLV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001941.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363018.10.0PREDICTED: dof zinc finger protein DOF5.6
TrEMBLA0A498I6340.0A0A498I634_MALDO; Uncharacterized protein
STRINGXP_009363018.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.17e-45Dof family protein