PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001631.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 347aa    MW: 36906.9 Da    PI: 8.6288
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001631.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.82.4e-3861119361
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  +++l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg rknk++
  Pbr001631.1  61 TENLRCPRCESSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGYRKNKSV 119
                  57899***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.6E-3263118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.03164118IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-2364115IPR003851Zinc finger, Dof-type
PROSITE patternPS01361066102IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIQELFGGAG LSNIEGGERK SFTFHGGTTC SPSLSPSPSP SSSTTTTATA TTTITAGLSS  60
TENLRCPRCE SSNTKFCYYN NYNLTQPRHF CKTCRRYWTK GGALRNVPIG GGYRKNKSVT  120
GSTASIGKNA AGKLKTVVSE IGRSGFGGGF DQEVQASPIL WGSPQNSHLL ALLKASHHQN  180
PNPNQLCNSV NVKQEGGMNM IGSHMMTTEA IAMNTARTLG LDPVCQAPSL GLCSSFWRNN  240
NQNQPPPSHH QHQQNGFIVG HEVQSSNIGI QELFQRLTPS TSQSGSYYSD QLNNVVASSS  300
SSSLSSYSTS SILDSSPAVG GGEMGYWNPA FTAWSFDLPT TNGAYH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-37AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348087.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLD9ZIY20.0D9ZIY2_MALDO; DOF domain class transcription factor
STRINGXP_009348087.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.13e-33DOF zinc finger protein 1