PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001568.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 257aa    MW: 29305.4 Da    PI: 8.7202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001568.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-135597754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  Pbr001568.2 55 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQEL 97
                 57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5074897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1749112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.29E-1351102No hitNo description
SMARTSM003535.5E-1554103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1754112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-115597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDNIGEEYKH YWETNMFLQT EELDSSWGLD EAFSGYYDSS SPDGAASSMA SKNIVSERNR  60
RKKLNERLFA LRAVVPNISK MDKASIIKDA IEYIQELHEQ EKRIQTEIVE LESGKSNKNP  120
GSDFEQDLPV LLRSKKKKID QIYDSEGSRT STIEILELRV TYMGEKTVVV SLTCSKRTDT  180
MVKLCEVFES LKLKIITANI TSFNGRVLKT VFVEKSRWDV FFPKKMAGKW TKGSSRLGCP  240
AKNYLDNGLH YANVRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-135397953Transcription factor MYC2
5gnj_B1e-135397953Transcription factor MYC2
5gnj_E1e-135397953Transcription factor MYC2
5gnj_F1e-135397953Transcription factor MYC2
5gnj_G1e-135397953Transcription factor MYC2
5gnj_I1e-135397953Transcription factor MYC2
5gnj_M1e-135397953Transcription factor MYC2
5gnj_N1e-135397953Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001568.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348093.11e-153PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-88BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A498I9471e-146A0A498I947_MALDO; Uncharacterized protein
STRINGXP_009348093.11e-152(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-91bHLH family protein