PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001559.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 378aa MW: 39368.8 Da PI: 5.8583 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.6 | 2.2e-34 | 90 | 191 | 3 | 99 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaks 93 ++++++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + + s s++ +s + +s Pbr001559.1 90 TRRSSTTDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTASTSVEDNSLP--PSS 185 68999**********************************************************887774443333323111222222211222..111 PP TCP 94 aakskk 99 ++k+k+ Pbr001559.1 186 TKKRKR 191 111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-28 | 94 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.453 | 95 | 149 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MTSYLEDQDD DGGASDLSTS TGDLGDNDHT NRDGVVSKQL HYDETTEFHS LKEEPIDSDP 60 PQPPQAYPIG MVPVAMPMPM SVPSAVSTLT RRSSTTDRHT KVEGRGRRIR IPATCAARIF 120 QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT TASTSVEDNS 180 LPPSSTKKRK RPSNSEFVDV KNDAVSQSSG LAPVSPSVPQ GLVPVWAVGG TGLMVPANAL 240 WIGPVGSGAG PSGQPQIWAL SPTMTPVFNM AGAARPISSF VANSGGGGAG VVDDRAPSPA 300 LSNSAANTST VGPRAAMWSS TTMAPSMSSS SHNSNGSGSG ATTKSQMLRD FSLQIYDKQE 360 LQLMGRPVGP ENHNQTQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001559.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362837.1 | 0.0 | PREDICTED: transcription factor TCP9-like | ||||
Swissprot | O64647 | 5e-64 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A498K0T3 | 0.0 | A0A498K0T3_MALDO; Uncharacterized protein | ||||
STRING | XP_009362837.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-57 | TCP family protein |