PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr001559.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 378aa MW: 39368.8 Da PI: 5.8583

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr001559.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.6	2.2e-34	90	191	3	99
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaks 93 ++++++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + + s s++ +s + +s Pbr001559.1 90 TRRSSTTDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTASTSVEDNSLP--PSS 185 68999**********************************************************887774443333323111222222211222..111 PP TCP 94 aakskk 99 ++k+k+ Pbr001559.1 186 TKKRKR 191 111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.6E-28	94	179	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.453	95	149	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MTSYLEDQDD DGGASDLSTS TGDLGDNDHT NRDGVVSKQL HYDETTEFHS LKEEPIDSDP 60 PQPPQAYPIG MVPVAMPMPM SVPSAVSTLT RRSSTTDRHT KVEGRGRRIR IPATCAARIF 120 QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT TASTSVEDNS 180 LPPSSTKKRK RPSNSEFVDV KNDAVSQSSG LAPVSPSVPQ GLVPVWAVGG TGLMVPANAL 240 WIGPVGSGAG PSGQPQIWAL SPTMTPVFNM AGAARPISSF VANSGGGGAG VVDDRAPSPA 300 LSNSAANTST VGPRAAMWSS TTMAPSMSSS SHNSNGSGSG ATTKSQMLRD FSLQIYDKQE 360 LQLMGRPVGP ENHNQTQ*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MTSYLEDQDD DGGASDLSTS TGDLGDNDHT NRDGVVSKQL HYDETTEFHS LKEEPIDSDP  60
PQPPQAYPIG MVPVAMPMPM SVPSAVSTLT RRSSTTDRHT KVEGRGRRIR IPATCAARIF  120
QLTRELGHKS DGETVRWLLE HAEQAIIEAT GTGTVPAIAV SVGGTLKIPT TASTSVEDNS  180
LPPSSTKKRK RPSNSEFVDV KNDAVSQSSG LAPVSPSVPQ GLVPVWAVGG TGLMVPANAL  240
WIGPVGSGAG PSGQPQIWAL SPTMTPVFNM AGAARPISSF VANSGGGGAG VVDDRAPSPA  300
LSNSAANTST VGPRAAMWSS TTMAPSMSSS SHNSNGSGSG ATTKSQMLRD FSLQIYDKQE  360
LQLMGRPVGP ENHNQTQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr001559.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009362837.1	0.0	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	5e-64	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A498K0T3	0.0	A0A498K0T3_MALDO; Uncharacterized protein
STRING	XP_009362837.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-57	TCP family protein