PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001458.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 117aa    MW: 13371.3 Da    PI: 9.1062
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001458.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rien+s rqvtfskRr+g+lKKA+ELSvLCdaevaviifs++ k+ye++s
  Pbr001458.1  9 ERIENNSSRQVTFSKRRKGLLKKAYELSVLCDAEVAVIIFSQKAKIYEFAS 59
                 69***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.202161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-38160IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-33387IPR002100Transcription factor, MADS-box
CDDcd002658.40E-42378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MVRGKIEMER IENNSSRQVT FSKRRKGLLK KAYELSVLCD AEVAVIIFSQ KAKIYEFASS  60
DMQRTINRYH KHENGSGQTN KVEVEQYVQI DGLGNEQMQY MREVLNPLCG AFAVHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-22185186MEF2 CHIMERA
6bz1_B3e-22185186MEF2 CHIMERA
6bz1_C3e-22185186MEF2 CHIMERA
6bz1_D3e-22185186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001458.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640061e-143KP164006.1 Pyrus pyrifolia clone PpSOC1-1 SOC1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341296.15e-58PREDICTED: MADS-box protein AGL42-like isoform X5
RefseqXP_018501073.16e-58PREDICTED: MADS-box protein AGL42-like isoform X1
SwissprotQ9FIS14e-34AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D4ZY402e-55A0A0D4ZY40_PYRPY; SOC1 MADS-box protein
STRINGXP_009347897.15e-58(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.42e-36AGAMOUS-like 42