PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001457.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27117.1 Da    PI: 8.2051
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001457.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.32.7e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs+++klye++s
  Pbr001457.1  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59
                 79***********************************************96 PP
2K-box62.12.1e-2177157584
        K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                  ++++   e++ ++l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR++  +ll+eq+e+l+ k 
  Pbr001457.1  77 QTNKvEVEQQVQHLKHEAAIMTKKIEILEASQRKLLGNDLDSCVVEELQEISSQLERSLRSIREREAQLLMEQMENLKAKS 157
                  3333478899********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.973161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-34381IPR002100Transcription factor, MADS-box
CDDcd002652.39E-42372No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-31323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1884157IPR002487Transcription factor, K-box
PROSITE profilePS5129712.72587184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS  60
DMQETLTRYH KYAKEEQTNK VEVEQQVQHL KHEAAIMTKK IEILEASQRK LLGNDLDSCV  120
VEELQEISSQ LERSLRSIRE REAQLLMEQM ENLKAKSGAK LLMEHSAQEK RGSASVSCEK  180
AGASASVNYW KQSIMSSEVE TELFIGPPIM RSVDRIAVYS NIHQINNNAC QSSLKTIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-22184186MEF2 CHIMERA
6bz1_B1e-22184186MEF2 CHIMERA
6bz1_C1e-22184186MEF2 CHIMERA
6bz1_D1e-22184186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001457.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640110.0KP164011.1 Pyrus pyrifolia clone PpSOC1-2 SOC1-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499521.11e-165PREDICTED: MADS-box protein AGL42-like isoform X3
SwissprotQ9FIS15e-71AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A0D4ZY441e-170A0A0D4ZY44_PYRPY; SOC1-like MADS-box protein
STRINGXP_009347901.11e-126(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.38e-63AGAMOUS-like 42