PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr001334.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 300aa MW: 32456.2 Da PI: 9.7492 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.3 | 1.4e-29 | 132 | 187 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ e++ ++ rkpy+heSRh+hA+rRpRg+gGrF Pbr001334.1 132 GPIYVNAKQYNGIMRRRQSRAKAVIENRA-ARLRKPYMHESRHRHAMRRPRGCGGRF 187 69***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.6E-32 | 129 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.402 | 130 | 190 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-22 | 133 | 155 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.1E-26 | 133 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-22 | 164 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 300 aa Download sequence Send to blast |
MAMQTVYFKG HEGIAPNPIG QFSSSLSGPW WSSLGSQPVY GESCGLSKPS TKEQPNTGDH 60 FTATKLAGRG TEQGLEKGNT NQFTIFPGDG QKSQAAISLQ SSPGKYHGHF ELGFSQPVGR 120 IMLPLNLTED EGPIYVNAKQ YNGIMRRRQS RAKAVIENRA ARLRKPYMHE SRHRHAMRRP 180 RGCGGRFLNT KTMNNGDKGT EGKQVGDGQL FRLSGSQSSE VLQSDSGTLN SSRETNGSIS 240 NISGSEVTST YSRGDLDCFS INHPGPSLHS LSDMRDSARG MVIPTKWVAA GDNCCNLNV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-16 | 131 | 191 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 171 | 180 | RHRHAMRRPR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr001334.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009343259.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_009343260.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
Refseq | XP_009362678.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-10-like | ||||
TrEMBL | A0A498ICE4 | 0.0 | A0A498ICE4_MALDO; Uncharacterized protein | ||||
STRING | XP_009343259.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009343260.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009362678.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3794 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06510.2 | 6e-51 | nuclear factor Y, subunit A10 |