PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25473.8 Da PI: 6.675 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.4 | 6.7e-17 | 48 | 94 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie v+fskRr g++ KA LS LC+aevavi+fs+ g+ly + Pbr001328.1 48 IEKPNSLLVSFSKRRGGLFRKACQLSGLCGAEVAVIVFSPCGRLYVF 94 555566679************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.451 | 38 | 98 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-20 | 38 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-15 | 40 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-21 | 41 | 111 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-19 | 47 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-15 | 60 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-15 | 75 | 96 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MPGIISTALX XXXXXXXXXX XXXXXXXXXX XALPNKKSVQ RKLVIKKIEK PNSLLVSFSK 60 RRGGLFRKAC QLSGLCGAEV AVIVFSPCGR LYVFGHPSAD SVLSRLERVN NALHGRQYIS 120 MHASSEDEDH DTDSSINESN SIESCMVSKT SIDLENLVLD LEKDTEEMEE DEASKFWWDQ 180 PIETVKKLDE LKQFKSSLDK LKAKVITQLD EMEMRKLVVR HYLM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001328.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362796.1 | 1e-136 | PREDICTED: agamous-like MADS-box protein AGL62, partial | ||||
TrEMBL | A0A498IGR7 | 2e-74 | A0A498IGR7_MALDO; Uncharacterized protein | ||||
STRING | XP_009362796.1 | 1e-135 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-21 | AGAMOUS-like 62 |