PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr001231.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

TALE

Protein Properties

Length: 688aa MW: 75213.2 Da PI: 6.2591

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr001231.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.5	5.5e-09	428	465	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Pbr001231.1 428 FEHflHPYPKDSDKILLARQTGLTRSQVSNWFINARVR 465 664459******************************88 PP
2	BELL	124.8	3.4e-40	291	361	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag gsakpYt++Al++iSrhFrcL+dai++qi Pbr001231.1 291 KLELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGGGSAKPYTAVALQTISRHFRCLRDAITGQI 361 679*******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.7E-60	209	359	IPR006563	POX domain
Pfam	PF07526	2.1E-48	216	358	IPR006563	POX domain
PROSITE profile	PS50071	12.034	406	469	IPR001356	Homeobox domain
SMART	SM00389	3.2E-9	409	473	IPR001356	Homeobox domain
CDD	cd00086	4.90E-13	409	470	No hit	No description
SuperFamily	SSF46689	3.81E-17	410	476	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	412	475	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-17	426	465	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MSAYYAGSNN QKDATPMLYL REPPLPSSYP EAPLLTGNMM MYMNSGSYSD AVAGSSQQQN 60 NCIEVISSVE GSDSNQQQHD VLSHLGGTRI GEQGFSPWRE GRNEMLVTHP MGSSSGILHG 120 GQNLQGQGLS LSLSTQIPSG MQMPSISYRN PNMGFASFLS PNPSVSSEGD GRNGSFRDEQ 180 PRNVEYLPSG FPGGNPDSSK GDLSPYGMSS IARTIPHNKY LKAAQQLLDE VVNVQKALKQ 240 HDIEKNQSTH DHQKSFKEGD DGSKNDLESG VSSNPQESAS NSPCELSHAE KLELQSKLTK 300 LLSMLDEVDR RYKQYYHQMQ IVVSSFDVIA GGGSAKPYTA VALQTISRHF RCLRDAITGQ 360 IQATRKSLGE QGASGSMKGV GISRLRYVDQ HLRQQRALQQ LGMMQQHPWR PQRGLPESSV 420 SILRAWLFEH FLHPYPKDSD KILLARQTGL TRSQVSNWFI NARVRLWKPM VEEMYKEEAG 480 DAEMDSNSSS ENAPQTKEGD NTRTMEDGVQ DMQPSASSTG TERCSTGQFM DSKSNHFHDV 540 EMAGSAGAAS FQNVTRHEAE AEYGLVKLRE GQRPGMDDCG LFSDANVQTD RNNERYMAAA 600 AAYQMPELGR FGSGSGVSLT LGLQHCDGGG SLPISRGTHH GFVAVRGDDL YNPAASSVGS 660 ETADFECLDS GNQQQHRFSS SHLLRIS*

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MSAYYAGSNN QKDATPMLYL REPPLPSSYP EAPLLTGNMM MYMNSGSYSD AVAGSSQQQN  60
NCIEVISSVE GSDSNQQQHD VLSHLGGTRI GEQGFSPWRE GRNEMLVTHP MGSSSGILHG  120
GQNLQGQGLS LSLSTQIPSG MQMPSISYRN PNMGFASFLS PNPSVSSEGD GRNGSFRDEQ  180
PRNVEYLPSG FPGGNPDSSK GDLSPYGMSS IARTIPHNKY LKAAQQLLDE VVNVQKALKQ  240
HDIEKNQSTH DHQKSFKEGD DGSKNDLESG VSSNPQESAS NSPCELSHAE KLELQSKLTK  300
LLSMLDEVDR RYKQYYHQMQ IVVSSFDVIA GGGSAKPYTA VALQTISRHF RCLRDAITGQ  360
IQATRKSLGE QGASGSMKGV GISRLRYVDQ HLRQQRALQQ LGMMQQHPWR PQRGLPESSV  420
SILRAWLFEH FLHPYPKDSD KILLARQTGL TRSQVSNWFI NARVRLWKPM VEEMYKEEAG  480
DAEMDSNSSS ENAPQTKEGD NTRTMEDGVQ DMQPSASSTG TERCSTGQFM DSKSNHFHDV  540
EMAGSAGAAS FQNVTRHEAE AEYGLVKLRE GQRPGMDDCG LFSDANVQTD RNNERYMAAA  600
AAYQMPELGR FGSGSGVSLT LGLQHCDGGG SLPISRGTHH GFVAVRGDDL YNPAASSVGS  660
ETADFECLDS GNQQQHRFSS SHLLRIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	415	472	1	58	Homeobox protein Meis1
4xrs_B	2e-16	415	472	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr001231.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347845.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	O65685	1e-138	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A498K013	0.0	A0A498K013_MALDO; Uncharacterized protein
STRING	XP_009347845.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2146	31	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-121	BEL1-like homeodomain 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]