PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr001211.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1136aa MW: 125890 Da PI: 8.3586

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr001211.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.1	3.3e-40	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hsk+++ lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+qa Pbr001211.1 148 MCQVDNCKEDLSNAKDYHRRHKVCEIHSKSTKSLVAKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQA 225 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-33	142	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.881	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.72E-37	147	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.2E-28	149	222	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1136 aa Download sequence Send to blast
MENAGGEVAA PIYFHQTLSG RFCDSPAMGR KRDHPYQGPN YQHPHLQQLR VTSPGNNWNP 60 NVWDWDAVRF VAKPLDSEMQ QLGTTFTTEQ RNKEEATGPV KNTAEDEHDE SLQLNLAGGF 120 TSVEEPVPRP NKRVRSGSPG NGNGSYPMCQ VDNCKEDLSN AKDYHRRHKV CEIHSKSTKS 180 LVAKQMQRFC QQCSRFHLLS EFDEGKRSCR RRLAGHNRRR RKTQAEDVTS RLTLPGGGDN 240 KSIGNIDIVN LLADIARPQG KNDVRNINGS SVLDREQLLQ ILSKINSLPL PADLAAKLPN 300 LGSLTRKASE LLSLDLQNKL NGRASTATMD LLTVLSATLA TSAPEALAML SQKCSQSSDS 360 EKTKLTCSDQ AAGPNLHKIP PQEIHSAGGE RSSTSYQSPM EDSDCQVQET RVNLPLQLFS 420 SSPENDSLPK LASSRKYFSS DSSNPTEDRS PSSSPPVVHT LFPMKSLAET VKSEKLLVSK 480 EVSANPDSSR TCGSNMPFDL FRGSNRGAEA TSIQSFPNQP GYTSSSSDHS PSSLNSDAQD 540 RTGRILFKLF DKDPSHLPGT LRTQIYNWLS NSPSEMESYI RPGCVVLSVY VSMPRASWEQ 600 LEENLVQHAR SLVQSSHSDF WRSGRFLVNT GRQLASHKDE KIRSCKAWRS CSSPELISVA 660 PLAVVGGQET SLLLRGRNLN TLGTRIHCTY MGGYTSKEAT GSAYHGMMFD EINLGSFQIH 720 DASPGVLGRC FIEVENGFRG NSFPVIIADA TICRELKVLE SVFEAESKVC DVISEDESHD 780 YGRPTSREEA LHFLNELGWL FQRKRICSML QEPHYALSRF KFLLTFSVEK DCCALVKTLL 840 DILFERNFDS DTLSGGSVML SDMQLLNRAV KRRCRKMVDL LINYSIVNSD IDKRYIFPPN 900 LAGPGSMTPL HLAACMSSTD DMIDALTNDP QEIGLNCWNS LLDASGQSPY AYALMRNNYS 960 YNNLVARKLA DRRNSQVTVT IGNERDQPQM SMELEHRTNT RSRQGSRSCT KCAIAATKYS 1020 RRVPGAQGLL QRPLIHSMLA IAAVCVCVCL FLRGSPDIGL VAPFKLALWS QWKREVFCLA 1080 AFKRKRRGVM ADLISKRILN QAQVFGDSDA GCLSPTNLRH VQSLGLLCSF VSRNG*

Sequence ? help Back to Top

Protein Sequence Length: 1136 aa Download sequence Send to blast

MENAGGEVAA PIYFHQTLSG RFCDSPAMGR KRDHPYQGPN YQHPHLQQLR VTSPGNNWNP  60
NVWDWDAVRF VAKPLDSEMQ QLGTTFTTEQ RNKEEATGPV KNTAEDEHDE SLQLNLAGGF  120
TSVEEPVPRP NKRVRSGSPG NGNGSYPMCQ VDNCKEDLSN AKDYHRRHKV CEIHSKSTKS  180
LVAKQMQRFC QQCSRFHLLS EFDEGKRSCR RRLAGHNRRR RKTQAEDVTS RLTLPGGGDN  240
KSIGNIDIVN LLADIARPQG KNDVRNINGS SVLDREQLLQ ILSKINSLPL PADLAAKLPN  300
LGSLTRKASE LLSLDLQNKL NGRASTATMD LLTVLSATLA TSAPEALAML SQKCSQSSDS  360
EKTKLTCSDQ AAGPNLHKIP PQEIHSAGGE RSSTSYQSPM EDSDCQVQET RVNLPLQLFS  420
SSPENDSLPK LASSRKYFSS DSSNPTEDRS PSSSPPVVHT LFPMKSLAET VKSEKLLVSK  480
EVSANPDSSR TCGSNMPFDL FRGSNRGAEA TSIQSFPNQP GYTSSSSDHS PSSLNSDAQD  540
RTGRILFKLF DKDPSHLPGT LRTQIYNWLS NSPSEMESYI RPGCVVLSVY VSMPRASWEQ  600
LEENLVQHAR SLVQSSHSDF WRSGRFLVNT GRQLASHKDE KIRSCKAWRS CSSPELISVA  660
PLAVVGGQET SLLLRGRNLN TLGTRIHCTY MGGYTSKEAT GSAYHGMMFD EINLGSFQIH  720
DASPGVLGRC FIEVENGFRG NSFPVIIADA TICRELKVLE SVFEAESKVC DVISEDESHD  780
YGRPTSREEA LHFLNELGWL FQRKRICSML QEPHYALSRF KFLLTFSVEK DCCALVKTLL  840
DILFERNFDS DTLSGGSVML SDMQLLNRAV KRRCRKMVDL LINYSIVNSD IDKRYIFPPN  900
LAGPGSMTPL HLAACMSSTD DMIDALTNDP QEIGLNCWNS LLDASGQSPY AYALMRNNYS  960
YNNLVARKLA DRRNSQVTVT IGNERDQPQM SMELEHRTNT RSRQGSRSCT KCAIAATKYS  1020
RRVPGAQGLL QRPLIHSMLA IAAVCVCVCL FLRGSPDIGL VAPFKLALWS QWKREVFCLA  1080
AFKRKRRGVM ADLISKRILN QAQVFGDSDA GCLSPTNLRH VQSLGLLCSF VSRNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-29	141	222	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	867	872	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr001211.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009362910.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A498HMP4	0.0	A0A498HMP4_MALDO; Uncharacterized protein
STRING	XP_009362910.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]