PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001141.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family FAR1
Protein Properties Length: 724aa    MW: 82770.3 Da    PI: 6.9812
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001141.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.61.3e-2045138190
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnHel 
  Pbr001141.1  45 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQMKPSEDGKMQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNIHNHELL 138
                  6***************9998874556679*******************9*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1745138IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23261353IPR018289MULE transposase domain
PROSITE profilePS509669.681525573IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-6547571IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-5548575IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MEDLSQDDIG TIEETAEDTI LSRQTSVNLV PFVGQRFVSQ EAAYEFYCSF AKQCGFSIRR  60
HRTRGKDGVG RGVTRRDFTC HRGGYPQMKP SEDGKMQRNR KSSRCGCQAY MRIVKRADFD  120
VPEWRVTGFS NIHNHELLKS NEVRLLPAYC SMSTDDKSRI CMFAKAGMSV RQMLRLMEME  180
KGVKLGCLPF TEIDVRNLLQ SFRNVNRDND AIDLIAMCKK MKDESPNFKY EFKIDGHNRL  240
EHIAWSYSSS VQLYEEFGDS VVFDTTHRLD AYDMLLGIWL GVDNHGMTCF FGCALLRDEN  300
MQSFSWALKT FLGFMKGKAP QTMLTDHNMW LKEAVAIEMP RSKHAFCIWH IVAKFSDWFS  360
VLLGPRYDDW KAEFHQLFNL DLAEDFEDRW REMVNEYGLQ ANKHVISLYA LRNFWALAYL  420
RNYFFAGIMS TSQSESINAF IQRFLSAQSQ LDRFVEQAAD VVDYNDRVGA KQKIERKLQR  480
VCLKTGSPIE SHAASVLTPY AFGKLQEELV SAPQYASLAV DEGCFQVRHH TEADGGCKVV  540
WIPCQEHISC TCYQFEFSGI LCRHVLRVLS TNNCFHIPDQ YLPTRWCSVS SSSTNTFETA  600
TITDNSEKIQ LLESMASTLI TESVETEERL DAACKQIAMV LSRIKDLPRT THNAIDIAYN  660
CPSDSLILPG VEDHGDGIVR FTIGNSHESV TLGKLKERRP RDMVEISKKR RHCSGPCCLS  720
VQQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001141.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347773.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_009347774.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A251QZE30.0A0A251QZE3_PRUPE; Uncharacterized protein
STRINGXP_009347773.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]