PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001138.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 124aa    MW: 13447.6 Da    PI: 10.7637
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001138.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.6e-191953135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Pbr001138.1 19 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 53
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-131363IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-131453No hitNo description
Gene3DG3DSA:3.30.50.109.3E-161753IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.23E-131872No hitNo description
PfamPF003206.2E-171953IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.071949IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401944IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MTIKTPDAGS SEEGFKKTCA DCGTSKTPLW RGGPAGPKSL CNACGIRSRK KRRAILGLNK  60
ENPNDKKGKK NKQLGDGLKQ RLLALGREVL MQRSTVERQR RKLGEEEQAA VLLMALSYGS  120
VYA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr001138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347769.18e-85PREDICTED: GATA transcription factor 15-like
RefseqXP_009369967.18e-85PREDICTED: GATA transcription factor 15
SwissprotQ8LG105e-50GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A314ZGC01e-80A0A314ZGC0_PRUYE; GATA transcription factor 15
TrEMBLA0A498I8T52e-80A0A498I8T5_MALDO; Uncharacterized protein
TrEMBLM5XTT21e-80M5XTT2_PRUPE; Uncharacterized protein
STRINGXP_009347769.13e-84(Pyrus x bretschneideri)
STRINGXP_009369967.13e-84(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-52GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]