PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr001078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GRF | ||||||||
Protein Properties | Length: 594aa MW: 64242.3 Da PI: 7.6197 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.6 | 2.6e-24 | 215 | 259 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pbr001078.1 215 DPEPGRCRRTDGKKWRCSRDAVQDQKYCERHINRGRHRSRKPVEG 259 79****************************************985 PP | |||||||
2 | QLQ | 59.8 | 7.6e-21 | 149 | 185 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +i+k Pbr001078.1 149 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPIKK 185 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-12 | 149 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-14 | 150 | 183 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.966 | 150 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.532 | 215 | 259 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.0E-20 | 216 | 258 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MDFGVMGLEG LVGPDAGGGE AVENVGDGSG SASAKQQRSW PAEDDWRDSK MLKNEDLNSP 60 KTMPLQYQGT PLLRSNSQLL PPPAESHRQE QMLSFSNNKS ESFLSKDGDF AYYQRNPTPI 120 PSPYPRNAGS PGYGSLNLSM HGTFTGARGP FTPSQWIELE HQALIYKYMT SNVPVPSNLL 180 IPIKKSLYPY GLSGPSNPTS IAWGTYHLGF SGNNDPEPGR CRRTDGKKWR CSRDAVQDQK 240 YCERHINRGR HRSRKPVEGQ PGQAVSGTSN SKRVPMNSSM STSVMPSSGA SSSLTTTQQQ 300 FKSLQPAVAA NPSADALVNR MQGQQGVSVM SAPTLKLKSN NSTYNIGKQE FLVEEASQAE 360 FGLVSTDSLL NPSHRNSYIS KDFSGSFLHF GDQDTQDHHP LRQFMDDWPK DQSCHSVPTW 420 PEEVKSDWTQ LSMSIPMASS EFSSSSSSPK HEKLALSPLR LSREFEPAQM NLGISKDISE 480 SSQKQTNWIP ITWGNSMGGP LGEVLTKTTS GGSKICINSK SPLSLLNEGW DGSPQLGSSP 540 TGVLQKSTFC SLSNSSSGSS PRGGENKKSS LDGASIYDDV LGSTFASSSV PSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr001078.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU056159 | 2e-82 | EU056159.1 Eriobotrya japonica clone ssrEJ102 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362603.1 | 0.0 | PREDICTED: growth-regulating factor 1-like | ||||
TrEMBL | A0A498KH58 | 0.0 | A0A498KH58_MALDO; Uncharacterized protein | ||||
STRING | XP_009362603.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2085 | 34 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 1e-111 | growth-regulating factor 1 |