PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr001036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 271aa MW: 30331.1 Da PI: 9.5659 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 72 | 96 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lCr f+ G C+ G rC+FaHg Pbr001036.1 72 YKTKLCRKFQM-GCCSSGQRCSFAHG 96 9**********.*************9 PP | |||||||
2 | zf-CCCH | 27.8 | 4.2e-09 | 132 | 155 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ Pbr001036.1 132 VRICRSFFRWGTCSYGDKCRFRHV 155 799******************885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-13 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 71 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0072 | 71 | 97 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-4 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-6 | 131 | 155 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 132 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-7 | 133 | 155 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
MSTPLPTQQF FARYLESVDN GRQIKHQIPT EEKEIKAQSD IKSQAFKKPR TSEAVSNSNA 60 ASGQNKMLPS YYKTKLCRKF QMGCCSSGQR CSFAHGTSDL RRTLRDAQGM ETENGNLARR 120 TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RDSSFTSIST AGGSAQFDCK 180 KSLELRKLCG YTTPECGSVQ ANSLMTYTRG NNASNRRMGV ATAYKHGQST QCNLEWNKLE 240 KLSRIYADWI EDMPLLHGSS SKVECYSSLV * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr001036.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362553.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 28-like | ||||
TrEMBL | A0A498HJ71 | 1e-179 | A0A498HJ71_MALDO; Uncharacterized protein | ||||
STRING | XP_009362553.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15275 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19360.1 | 3e-12 | C3H family protein |