PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000977.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 200aa MW: 22325.5 Da PI: 8.318 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.5 | 3.8e-17 | 42 | 124 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YAk+vGF +r+ +s+ks+r+g+i++r + C +++++ +++ ++ C a++ +k+e g+w+++k+ +HnH l+ Pbr000977.1 42 FYDDYAKRVGFVTRVLSSRKSERDGSIISRGLGCRGISENRRKV------MQKECGEQEVCPAMVLLKQEMPGRWVIKKFLGDHNHLLV 124 9*********************************7655555544......4578888999**************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-14 | 42 | 124 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MDDLNGTVET STGGESNNIE AGPCQEPYEG MLFESEEAAK VFYDDYAKRV GFVTRVLSSR 60 KSERDGSIIS RGLGCRGISE NRRKVMQKEC GEQEVCPAMV LLKQEMPGRW VIKKFLGDHN 120 HLLVIQSPKI RKTLDEKDKK IQELSAELRV KKRLSAAYRD QLLAFIKDIE DHNAHLSTKV 180 QSVSNKIKEL EAKAGALTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000977.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347677.1 | 1e-147 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A498JY17 | 1e-121 | A0A498JY17_MALDO; Uncharacterized protein | ||||
STRING | XP_009347677.1 | 1e-146 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-56 | FAR1 family protein |