PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 258aa MW: 30045.5 Da PI: 5.6074 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.9 | 1.3e-26 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y+++ GF+vr++++++s+ n++i+ ++fvCskeg+r+++ +++++ + ++tr gC+a++++ +++ kw+vtk+++eHnH+l+ Pbr000976.1 77 EFYVAYGRRSGFTVRIHHNRRSRVNNQIIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPVTREGCQAMIRLAQRDGPKWVVTKFVKEHNHKLM 167 6******************************************99883332.245899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-24 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDHQSIHGFD SDESDLDMHA ETYEHNEGIE DVLPENLDLC VDEKEETEEQ SADLPMNVEA 60 LEPYIGMEFN SRDEAREFYV AYGRRSGFTV RIHHNRRSRV NNQIIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPVTREGCQ AMIRLAQRDG PKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LASEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQINMIL KDLEKHTEHM SKKVSDTVQS 240 IKEIEEEQSE DSDSGWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000976.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347669.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | M5XFI8 | 1e-178 | M5XFI8_PRUPE; Uncharacterized protein | ||||
STRING | XP_009347669.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 3e-39 | FAR1 family protein |