PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 43327.8 Da PI: 5.1139 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.1 | 1.8e-19 | 25 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 +p GfrFhPtd+el++++L ++ +++ ++ ++ i+e+d++ k+ Pw +++ + e++++yfF++ +++ + r +r + + g+W+++ + Pbr000919.1 25 MPLGFRFHPTDQELISFFLYNRFLHREslmadCNNFNLIHEFDLFaKTPPWVVWENFGGpglEDQDLYFFCQLKTRIQ--ARIKReIDAGGTWSESNS 120 699*******************9999978877666678****9762678899965443344488999*****988775..58888456689**98766 PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+v++ + ++ g k+ L + k + + dW+++ey++ Pbr000919.1 121 -KPVKDLqNLKALGKKRNLRYEK--EGCEHDGDWLLEEYSI 158 .67766437788********984..4444589*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-20 | 18 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.61 | 25 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-15 | 26 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MEEEGYGGNV PLGSYKNPLL GSNGMPLGFR FHPTDQELIS FFLYNRFLHR ESLMADCNNF 60 NLIHEFDLFA KTPPWVVWEN FGGPGLEDQD LYFFCQLKTR IQARIKREID AGGTWSESNS 120 KPVKDLQNLK ALGKKRNLRY EKEGCEHDGD WLLEEYSILP SVVAGADDSD HEIGKVVLCR 180 LKKNSRSGNK KNCSNSTQQV NEQPAKKRAR KEVKEKPAKK KARNEVKQRP AKKKARNEVG 240 SQNTTSVITH TVEELQNCPS TSSAPVVPFD ETNYKMISDA INHDQQCISN IDGSTMPTNF 300 SDHDYVPVSF ASECGEFLLK DEDFLLKNGE DMFFDLEDLL PPLDCGSAWS LEKLPQIDGT 360 QEPLPLDGMS CWNDCLWMGN CVQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000919.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347575.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A498IRZ7 | 0.0 | A0A498IRZ7_MALDO; Uncharacterized protein | ||||
STRING | XP_009347575.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12591 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 8e-14 | NAC domain containing protein 94 |