PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27948.6 Da PI: 9.8855 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Pbr000556.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 112.4 | 4.4e-37 | 92 | 189 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ss++ ++ea ++++qqe+akL+++i nLq+ +R+++G+ L+s+ +k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k++e Pbr000556.1 92 SSNTGlVSEASTQYYQQEAAKLRAQIGNLQNANRNMMGDALSSMPIKDLKSLESKLEKGISRIRSKKNELLFAEIEYMQKRELDLHSNNQLLRAKIAE 189 45556799***************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.613 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-41 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.60E-45 | 18 | 94 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-33 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-27 | 101 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.559 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MANENKSLSI DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKE TVERYRKACA DSSNTGLVSE ASTQYYQQEA AKLRAQIGNL 120 QNANRNMMGD ALSSMPIKDL KSLESKLEKG ISRIRSKKNE LLFAEIEYMQ KRELDLHSNN 180 QLLRAKIAEN ERGQQNINVM AGGGPSSYDI LQSQPYDSRN YFQVNALQPN HQYNPRHDQI 240 SLQLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000556.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164009 | 0.0 | KP164009.1 Pyrus pyrifolia clone PpAG-4 AG MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009351902.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X2 | ||||
Refseq | XP_009351910.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Refseq | XP_009351917.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X3 | ||||
Refseq | XP_018502014.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS-like isoform X1 | ||||
Swissprot | Q40168 | 1e-126 | AG_SOLLC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0D4ZXV3 | 1e-179 | A0A0D4ZXV3_PYRPY; AG MADS-box protein | ||||
STRING | XP_009351902.1 | 1e-180 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-113 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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