PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000478.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 267aa    MW: 28844.8 Da    PI: 9.0611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000478.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.85.9e-1174120354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  +k+L
  Pbr000478.1  74 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAAVISQVKEL 120
                  58*************************8.....7********9999888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.20571120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-974120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1275122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1375122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1077126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.03E-6159231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDFYRFNSKS SFNPSLFDPF KHGASGFGGA LQGGAAVALP HSLVLDSEKG ELVKAPARVG  60
NKGVSEAKAL AALKNHSEAE RRRRERINAH LSTLRGLVPC TEKMDKAALL AAVISQVKEL  120
KKDALESSKG FLIPVDDDEV KVEPYVIGAG DGTISVKASV CCEYRSELLS DLREALDSLH  180
LKMVKAEIAT LGNRVKNVFV LTSFKKDSND ANTEAYELLA SSVHQVLSSV LDKASPSPEY  240
SPRTTLPSKR RRLSYFDKID TSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERRRRE
2248252KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000478.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894270.0KP689427.1 Prunus pseudocerasus isolate Unigene6250 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348588.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLA0A498JT701e-177A0A498JT70_MALDO; Uncharacterized protein
STRINGXP_009348588.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-34bHLH family protein