PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr000450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 218aa MW: 24568.2 Da PI: 7.3005 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.1 | 3.2e-34 | 34 | 144 | 3 | 110 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssgkaaksaa.ks 97 ++kd+hsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d+++k+i+WL++++k ai +l +++++ + ++c++ + ++ ++++g+++ + ++ Pbr000450.1 34 ARKDQHSKVYTSKGPRDRRFRLSAHTAIQFYDVQDRLGYDRPGKAINWLIEKSKSAIEALSKSEQPCQeyNDCTNTNVFGQQTEQEIGEQSMHQFwNH 131 79*************************************************************88877778885555555555555554443333333 PP TCP 98 kksqksaasalnl 110 +s+ + ++++n+ Pbr000450.1 132 PESNGELETMSNV 144 3333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.1 | 35 | 93 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.9E-31 | 35 | 127 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 218 aa Download sequence Send to blast |
MPTSKSAFKQ PRVDNARYGK IVKVHGGHIV RSLARKDQHS KVYTSKGPRD RRFRLSAHTA 60 IQFYDVQDRL GYDRPGKAIN WLIEKSKSAI EALSKSEQPC QEYNDCTNTN VFGQQTEQEI 120 GEQSMHQFWN HPESNGELET MSNVSPMNNV NNLKEPVFDP HQLSSLNYAE GALDSASSLS 180 DSKFKEMGWF QSLVAWNYNA NDGGEICPYN SSHVSLH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-20 | 40 | 93 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-20 | 40 | 93 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr000450.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009353196.1 | 1e-165 | PREDICTED: transcription factor TCP5-like | ||||
TrEMBL | A0A498ISM7 | 1e-137 | A0A498ISM7_MALDO; Uncharacterized protein | ||||
STRING | XP_009353196.1 | 1e-164 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14863 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G31070.1 | 3e-38 | TCP domain protein 10 |