PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 36669.1 Da PI: 8.4794 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109 | 5.6e-34 | 55 | 195 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 lp+G++F+Ptd+e++ ++L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + + Pbr000412.1 55 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgsETR 148 799***********9.99****9999956644322..22222333336**********.666777788******************744446555778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Pbr000412.1 149 WHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 195 ************.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-38 | 49 | 214 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.91 | 55 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-15 | 56 | 195 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTWCNDSDDE RAIQIVSPPP PNNPNNPNEF RNITCPSCGH HIEFDQAGIH DLPGLPAGVK 60 FDPTDQEILQ HLEAKVLSDT RKLHPLIDEF IPTLEGENGI CYTHPEKLPG VNKDGQIRHF 120 FHRPSKAYTT GTRKRRKVHT EEDGSETRWH KTGKTRPVLV GGAVKGFKKI LVLYTNYGRQ 180 RKPEKTNWVM HQYHLGNNEE EKDGELVVSK VFYQTQPRQC GSSIKDVPTF DHHKGVNIRS 240 GQGNDGLISA AATNPLPLAK KAGLVEYYNP GGPFMNYDHH QHNHNQGGHN RESPPQLIPN 300 LVVQGDGSSF IRLTSDASKG KLERKIA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000412.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198119 | 0.0 | KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009344641.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-123 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A498JYR6 | 0.0 | A0A498JYR6_MALDO; Uncharacterized protein | ||||
STRING | XP_009344641.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-124 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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