PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr000407.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 1727aa MW: 194045 Da PI: 5.2311

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr000407.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	30	85	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgL++rq ++WF+ rR k+kk Pbr000407.1 30 PKRQMKTPFQLETLEKAYALETYPSEAIRAELSEKLGLSDRQLQMWFCHRRLKDKK 85 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-18	8	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-16	16	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.682	26	86	IPR001356	Homeobox domain
SMART	SM00389	4.2E-18	28	90	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-16	30	85	IPR001356	Homeobox domain
CDD	cd00086	3.32E-14	31	86	No hit	No description
SMART	SM00571	4.8E-22	547	606	IPR018501	DDT domain
PROSITE profile	PS50827	16.96	547	606	IPR018501	DDT domain
Pfam	PF02791	2.8E-17	549	603	IPR018501	DDT domain
Pfam	PF05066	8.9E-15	728	796	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15613	4.3E-14	1096	1168	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1727 aa Download sequence Send to blast
MEAASEGENQ NKNHESNSKL NNSSEGQSKP KRQMKTPFQL ETLEKAYALE TYPSEAIRAE 60 LSEKLGLSDR QLQMWFCHRR LKDKKEGGPP KKQRKLVTTL PEPPIDDLAH GSEPGSDYGS 120 GSGSGSSPFG HPELRNVVAR GVADDIPMRG RRYYESPQSI LELRAIACVE AQLGEPLRED 180 GPLLGIEFDP LPPDAFGAPL AVAEQHKRSG HALEGKYERH DAKPIKATTR ALHEYPFLQD 240 HSSIRSDAYG QVSQSHFHDS AIDGPTARTS SFAVGNEPLS RVHGVHGHAS RVRLLSQQER 300 QVVPYSSPVD DGSVAQRDSF TNVRVNTQFS DSPVVAPALE NSNVLSEGQI NDSILRMERK 360 RKSEEARIAK EVEAHELRIR KELEKQDILR RKNEERMRKE MEKQDRERRK EEERLMRERQ 420 REEERLKREQ KREIERREKF LQKEYIRAEK RRQKEELRKE REVVKRKAAL EKATARRLAK 480 ESMELIEDEQ LELMELAATS KGLSSIICID LDTLQNLDAF RDSLVAFPPR SVQLKGPFAI 540 QPWINSEANI GNLLMVWRFL ITFADVLELW PFTLDEFVQA FHDYDSRLLG EIHVALLRLI 600 IKDIEDVART PTGLGINQNG AANPGGGHPQ IVEGAYAWGF DIRNWQQHLN LLTWPEIFRQ 660 LALSAGFGPQ LKKRSITWSY TPDNHEGKGC QDAISNLRNG SAAVNAFAVM QEKGLLAPRR 720 SRHRLTPGTV KFAAFHVLSL EGNKGLTVLD LADKIQKSGL RDLTTSKTPE ASISVALTRD 780 TKLFERIAPS TYRVRAAYRK DPVDAEAILS AARKKIQIFE NGILAAEDVD DVERDDVEND 840 EVERDEESEC EVDEDPEVDD LATPSVANKS PDDYNEVISF SENGKDSLSN DVGLAVKNEF 900 DKDVLCSPVT GSKDAFCPSA SSKQCVLGAD ISTSHLDQEN MEIDESKSGN TIRIVLEDRL 960 EAANALKKQM WAEAQLDKSR LKEENVGRLD IPSLMGGKAE VQATGVEDGL SPLRDVDNRN 1020 IDASPVTAEN EKSIHGSQGV QNQLNGVHVE RTSAAQDISM GSDNFLTQQL AYASKRSRSQ 1080 LKSYIAHRAE EMYAYRSLPL GQDRRHNRYW QFVASASRHD PGSGRIFIEL NNGSWRLIDT 1140 EEAFDALVTS LDTRGIRESH LRLMLQKIEA SFKENVQKNT HRPNNAGPTK NHVKNEADEM 1200 DSSPDFPSHF DSPESAVCAL NSDTAQTSSS FRIELDSSEA EKRAALRRYQ DFQKWMWKEC 1260 SNSSTLCATK YGKERCRPLF DVCDVCLNCY YFEDSHCDTC HQTFDAFNRN FDFGEHVMQC 1320 KEKRMLEPWN FDIPCTSLPL ARRLLKTLIA LVEVSIPPEA LHLSWTDDHR KMWGEKLNAS 1380 SSMDELLQIL TLVETAVKKD FLSSHFAVTE ELLGSCKQSG VVRDYLDSGS VPVLPWIPHT 1440 TAAVALRLHE IDSSITYVKQ AKAEPTADKE VGEYLNQPMR LPTSRSETEL TEAGLNEYMR 1500 EENSTHLKSG RNSFRRGRGG REQGRGKRWQ KKVSNPKSGA SRQNIRGNEN LNQGLRTVGK 1560 RTQGQGSGRG RRTVRKRRMK NRAVEGTPLA HVSDMRSSPE SGGESPRNLA EEWDDEKIDM 1620 RGDEQGGGFE RVDTLESEDD DQAVGYEQGN WEIGFDGTSS GWNGGLVEAS DDDVDASEDD 1680 NNVMEEVRDE DSEGDVDMSD ASDEILPNTM RNDDGTESES SDDSSE*

Sequence ? help Back to Top

Protein Sequence Length: 1727 aa Download sequence Send to blast

MEAASEGENQ NKNHESNSKL NNSSEGQSKP KRQMKTPFQL ETLEKAYALE TYPSEAIRAE  60
LSEKLGLSDR QLQMWFCHRR LKDKKEGGPP KKQRKLVTTL PEPPIDDLAH GSEPGSDYGS  120
GSGSGSSPFG HPELRNVVAR GVADDIPMRG RRYYESPQSI LELRAIACVE AQLGEPLRED  180
GPLLGIEFDP LPPDAFGAPL AVAEQHKRSG HALEGKYERH DAKPIKATTR ALHEYPFLQD  240
HSSIRSDAYG QVSQSHFHDS AIDGPTARTS SFAVGNEPLS RVHGVHGHAS RVRLLSQQER  300
QVVPYSSPVD DGSVAQRDSF TNVRVNTQFS DSPVVAPALE NSNVLSEGQI NDSILRMERK  360
RKSEEARIAK EVEAHELRIR KELEKQDILR RKNEERMRKE MEKQDRERRK EEERLMRERQ  420
REEERLKREQ KREIERREKF LQKEYIRAEK RRQKEELRKE REVVKRKAAL EKATARRLAK  480
ESMELIEDEQ LELMELAATS KGLSSIICID LDTLQNLDAF RDSLVAFPPR SVQLKGPFAI  540
QPWINSEANI GNLLMVWRFL ITFADVLELW PFTLDEFVQA FHDYDSRLLG EIHVALLRLI  600
IKDIEDVART PTGLGINQNG AANPGGGHPQ IVEGAYAWGF DIRNWQQHLN LLTWPEIFRQ  660
LALSAGFGPQ LKKRSITWSY TPDNHEGKGC QDAISNLRNG SAAVNAFAVM QEKGLLAPRR  720
SRHRLTPGTV KFAAFHVLSL EGNKGLTVLD LADKIQKSGL RDLTTSKTPE ASISVALTRD  780
TKLFERIAPS TYRVRAAYRK DPVDAEAILS AARKKIQIFE NGILAAEDVD DVERDDVEND  840
EVERDEESEC EVDEDPEVDD LATPSVANKS PDDYNEVISF SENGKDSLSN DVGLAVKNEF  900
DKDVLCSPVT GSKDAFCPSA SSKQCVLGAD ISTSHLDQEN MEIDESKSGN TIRIVLEDRL  960
EAANALKKQM WAEAQLDKSR LKEENVGRLD IPSLMGGKAE VQATGVEDGL SPLRDVDNRN  1020
IDASPVTAEN EKSIHGSQGV QNQLNGVHVE RTSAAQDISM GSDNFLTQQL AYASKRSRSQ  1080
LKSYIAHRAE EMYAYRSLPL GQDRRHNRYW QFVASASRHD PGSGRIFIEL NNGSWRLIDT  1140
EEAFDALVTS LDTRGIRESH LRLMLQKIEA SFKENVQKNT HRPNNAGPTK NHVKNEADEM  1200
DSSPDFPSHF DSPESAVCAL NSDTAQTSSS FRIELDSSEA EKRAALRRYQ DFQKWMWKEC  1260
SNSSTLCATK YGKERCRPLF DVCDVCLNCY YFEDSHCDTC HQTFDAFNRN FDFGEHVMQC  1320
KEKRMLEPWN FDIPCTSLPL ARRLLKTLIA LVEVSIPPEA LHLSWTDDHR KMWGEKLNAS  1380
SSMDELLQIL TLVETAVKKD FLSSHFAVTE ELLGSCKQSG VVRDYLDSGS VPVLPWIPHT  1440
TAAVALRLHE IDSSITYVKQ AKAEPTADKE VGEYLNQPMR LPTSRSETEL TEAGLNEYMR  1500
EENSTHLKSG RNSFRRGRGG REQGRGKRWQ KKVSNPKSGA SRQNIRGNEN LNQGLRTVGK  1560
RTQGQGSGRG RRTVRKRRMK NRAVEGTPLA HVSDMRSSPE SGGESPRNLA EEWDDEKIDM  1620
RGDEQGGGFE RVDTLESEDD DQAVGYEQGN WEIGFDGTSS GWNGGLVEAS DDDVDASEDD  1680
NNVMEEVRDE DSEGDVDMSD ASDEILPNTM RNDDGTESES SDDSSE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRLKDKKE
2	425	431	LKREQKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr000407.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	2e-48	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	2e-48	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018500297.1	0.0	PREDICTED: LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1-like
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A498JTD5	0.0	A0A498JTD5_MALDO; Uncharacterized protein
STRING	XP_009344071.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1