PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000396.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 171aa    MW: 17786 Da    PI: 8.5466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000396.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.92.5e-0827562856
          AP2 28 r.krfslgkfgtaeeAakaaiaarkklege 56
                 + +r +lg+f+t eeAa a++ a++ l+g+
  Pbr000396.1 27 CaARLWLGTFDTREEAALAYDGAARTLRGA 56
                 569************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.078163IPR001471AP2/ERF domain
CDDcd000181.52E-15364No hitNo description
SMARTSM003808.4E-10469IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-172063IPR001471AP2/ERF domain
PfamPF008475.6E-52655IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-112764IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGPVRRRNPG PVEEDEGLAR HIRRASCAAR LWLGTFDTRE EAALAYDGAA RTLRGAKAKT  60
NFPAPIPGGI SVDLNAPSAA HWATHSGRLV EFLHTGVLND MGSGTSTNDT LPLMARREPQ  120
QTPVGVAGNV GGGGNATVAE GSGFGSTASF LGLVRRGLPI DLNEPPPLWL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6237180.0KJ623718.1 Pyrus x bretschneideri ethylene response factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342721.11e-85PREDICTED: ethylene-responsive transcription factor 12-like
TrEMBLA0A0D3QIK57e-82A0A0D3QIK5_9ROSA; Ethylene response factor 4
STRINGXP_009342721.14e-85(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-23ERF domain protein 12