PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000386.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 127aa    MW: 14058.5 Da    PI: 4.6557
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000386.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.68.1e-2474123150
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
                  +C+v++C+adls++k+y+rrhkvC+vh+kap+vl+ g +qrfCqqCsr +
  Pbr000386.1  74 CCKVDSCNADLSDLKQYYRRHKVCDVHAKAPAVLMGGFRQRFCQQCSRVY 123
                  6***********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-2468122IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.17972126IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.03E-2373124IPR004333Transcription factor, SBP-box
PfamPF031101.3E-1875122IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MESGRAHGKS TLVKYEEEEE EEEEEEEEEE SRSGTPSIVD GEDERRDTVM MMNSTAPSPT  60
GRRSGAGGST AGPCCKVDSC NADLSDLKQY YRRHKVCDVH AKAPAVLMGG FRQRFCQQCS  120
RVYLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A7e-2071125256squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000386.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738521e-149KF673852.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342532.17e-69PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ9S7P54e-19SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLD9ZJC28e-65D9ZJC2_MALDO; SBP-box transcription factor
STRINGXP_009342532.13e-68(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.11e-20squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]