PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000381.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 499aa    MW: 55412.4 Da    PI: 6.3778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000381.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.2e-17196293196
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+k+l++sdv+ +gr++lpkk ae++  +++ +e+++lt++d  s+r We+k+++  +++s++yv++  +  Fv+ ++L++gD + ++  ++++++l+
  Pbr000381.1 196 FKKELKNSDVGPLGRIILPKKEAENNlpMLSDREGIQLTVRDvHSNRHWEFKYKFwsNNRSRMYVFE-YTGAFVRKKRLQAGDCIYLY--EDECKNLY 290
                  89*********************999**8888999*******5566*******99777777778888.99*****************9..66899888 PP

                  EEE CS
           B3  94 vkv 96 
                  ++v
  Pbr000381.1 291 ISV 293
                  876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-25189293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-20194293IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-20194295No hitNo description
SMARTSM010191.3E-13196297IPR003340B3 DNA binding domain
PfamPF023624.3E-13196293IPR003340B3 DNA binding domain
PROSITE profilePS508639.178196297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MENFNPPSIP STTTVTSTHK TNNSQSTCEP VSCLPSTTCS PLATQYRYYP AQYLAPNPGL  60
QFPHANNHYL YHQAGLHMYP FLVGAQPNMV LSREQASRDQ SGWILDALMS KSARKERKMA  120
RQRSLSLSRN AANAAVSCTC SPPLSRHPPF HGNDGDDDTR GILSTSSSGN GADLQDTKEQ  180
LYLFCTPDNK KLRPLFKKEL KNSDVGPLGR IILPKKEAEN NLPMLSDREG IQLTVRDVHS  240
NRHWEFKYKF WSNNRSRMYV FEYTGAFVRK KRLQAGDCIY LYEDECKNLY ISVEKVPRPA  300
DVAEPSSSQQ RNTTTNPTDQ TIKIVPNINS SLTNTTDNNK TNTNNSANTN TNTNTNANTP  360
NADAKTLRSN PYAASNLSSP SPYTYVAGDE EDELSLEQLV EQLKQDQEAN IFADALSMVS  420
RDYREHEEAT TLSSIAASHI ETSTQPPSTL AAGIDPSSSS SSSETRATMG MVDEDHFELD  480
DCYKGLGMLP EVNRYKCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A8e-411862933110B3 domain-containing transcription factor LEC2
6j9c_D8e-411862933110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341913.10.0PREDICTED: B3 domain-containing transcription factor LEC2-like
TrEMBLA0A498JZP50.0A0A498JZP5_MALDO; Uncharacterized protein
STRINGXP_009341913.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.17e-43B3 family protein