PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 499aa MW: 55412.4 Da PI: 6.3778 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.2 | 1.2e-17 | 196 | 293 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+l++sdv+ +gr++lpkk ae++ +++ +e+++lt++d s+r We+k+++ +++s++yv++ + Fv+ ++L++gD + ++ ++++++l+ Pbr000381.1 196 FKKELKNSDVGPLGRIILPKKEAENNlpMLSDREGIQLTVRDvHSNRHWEFKYKFwsNNRSRMYVFE-YTGAFVRKKRLQAGDCIYLY--EDECKNLY 290 89*********************999**8888999*******5566*******99777777778888.99*****************9..66899888 PP EEE CS B3 94 vkv 96 ++v Pbr000381.1 291 ISV 293 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-25 | 189 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.66E-20 | 194 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.74E-20 | 194 | 295 | No hit | No description |
SMART | SM01019 | 1.3E-13 | 196 | 297 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-13 | 196 | 293 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.178 | 196 | 297 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MENFNPPSIP STTTVTSTHK TNNSQSTCEP VSCLPSTTCS PLATQYRYYP AQYLAPNPGL 60 QFPHANNHYL YHQAGLHMYP FLVGAQPNMV LSREQASRDQ SGWILDALMS KSARKERKMA 120 RQRSLSLSRN AANAAVSCTC SPPLSRHPPF HGNDGDDDTR GILSTSSSGN GADLQDTKEQ 180 LYLFCTPDNK KLRPLFKKEL KNSDVGPLGR IILPKKEAEN NLPMLSDREG IQLTVRDVHS 240 NRHWEFKYKF WSNNRSRMYV FEYTGAFVRK KRLQAGDCIY LYEDECKNLY ISVEKVPRPA 300 DVAEPSSSQQ RNTTTNPTDQ TIKIVPNINS SLTNTTDNNK TNTNNSANTN TNTNTNANTP 360 NADAKTLRSN PYAASNLSSP SPYTYVAGDE EDELSLEQLV EQLKQDQEAN IFADALSMVS 420 RDYREHEEAT TLSSIAASHI ETSTQPPSTL AAGIDPSSSS SSSETRATMG MVDEDHFELD 480 DCYKGLGMLP EVNRYKCI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 8e-41 | 186 | 293 | 3 | 110 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 8e-41 | 186 | 293 | 3 | 110 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00032 | PBM | Transfer from AT1G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000381.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009341913.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor LEC2-like | ||||
TrEMBL | A0A498JZP5 | 0.0 | A0A498JZP5_MALDO; Uncharacterized protein | ||||
STRING | XP_009341913.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12348 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 7e-43 | B3 family protein |