PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000328.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 292aa    MW: 32489.9 Da    PI: 7.9371
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000328.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof111.24.8e-3547104361
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                   + lkcprC+stntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGg  rknk+ 
  Pbr000328.1  47 ADPLKCPRCESTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGG-IRKNKRL 104
                  5679*********************************************96.6677664 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2248103IPR003851Zinc finger, Dof-type
PfamPF027013.0E-3149102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.8650104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLSTKQVNS DGLDWSQTSL LQAQTFQLPK PPNAVRRQHQ QNQQQQADPL KCPRCESTNT  60
KFCYYNNYNK SQPRHFCRAC KRHWTKGGTL RNVPVGGIRK NKRLKKSSNT SPSEAAATTV  120
ANTAAIDDHH KRETAAQALY HALIGPQSSL PQQNLDNTII FSSAGLSSTT TLPFLHQSRN  180
LITFDPFSSS ISTTTSSSFD TNLSSISTSL QSSNVYNYAA AEDQFKATVE EPTITSIMPN  240
ILPQQPNWKT PFPSNAVDVY SNDWNWEDIE TLVSTDLNLL HWDDSSDHIQ L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335097.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLA0A498JTN91e-178A0A498JTN9_MALDO; Uncharacterized protein
STRINGXP_009335097.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.26e-30Dof family protein