PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 375aa MW: 41593.5 Da PI: 7.9671 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.2 | 6.4e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk++l++ ++ Pbr000315.1 15 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-TIIAEVDLYKFDPWELPSKATFGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPILTSiGN 111 79****************************.89***************8888999**************************************99899 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ pkg kt+W+mheyrl Pbr000315.1 112 HNVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-64 | 10 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.989 | 15 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MESTDSSSGS PHPQLPPGFR FHPTDEELVV HYLKKKAASI PLPVTIIAEV DLYKFDPWEL 60 PSKATFGEQE WYFFTPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSIG NHNVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLINNTTTAN MSFSTTKPSD AANKKASLRL DDWVLCRVYK 180 KNNAQRPTMS MEGDHFLHKA EDSNSSMEEG MFLHPSILPT QKPPPFPPPL SSKLPTTNYT 240 ALLESDYHES FFEGILSSSD HQQGSHSHHH DHDHDQFGAI STSSSKTSIP LKRQLSSPFW 300 NDVGSIGSAA AATTTSSSKR FQADLNSENN SFVSLLNQMP QGTAPFYPNP ALLGSLGDEV 360 LRPQFQLPSM NWNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-73 | 15 | 183 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000315.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198124 | 0.0 | KF198124.1 Malus hupehensis NAC domain protein (NAC92) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379434.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 1e-108 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A498K1L9 | 0.0 | A0A498K1L9_MALDO; Uncharacterized protein | ||||
STRING | XP_009379434.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-104 | NAC domain containing protein 25 |