PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr000285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 894aa MW: 98636 Da PI: 7.4786 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 4.9e-18 | 334 | 433 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L +gD+v+F++ + e++lv+ Pbr000285.1 334 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLLAGDIVTFSRLE-PEGKLVM 429 89**************************555566778***************9989999999***9.********************766.7777777 PP EEE- CS B3 95 kvfr 98 ++++ Pbr000285.1 430 GFRK 433 7776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 36 | 96 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 8.5E-30 | 331 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-19 | 331 | 434 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.90E-21 | 332 | 433 | No hit | No description |
PROSITE profile | PS50863 | 10.983 | 334 | 435 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 334 | 435 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-15 | 334 | 433 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.181 | 562 | 612 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.1E-12 | 567 | 609 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 894 aa Download sequence Send to blast |
MSSSSSASKV CYNSECKEVK SEFPRKGWRL RTGEYCELCD RCYFAYEEGR FCETFHMNAA 60 GWRCCESCGK RVHCGCIVSS HAFTLLDPGG IECMTCARKN YVMTSNPAWP TSMFFHSPLS 120 ERLKDLSTKN WTQLAGSGPV PWRQAPSLFN SSIPSSELHT RVPHEVDGST GINKLNASER 180 IFVSTLEKKK VEEFSERLMK VNLSIGTQQS LENGIGNPGI NHEEKSSSCL NISQQSASLK 240 EEPSTPQFVP YGSPSETNPQ LGVTGTNLRP IAPLAKNYNG NGVESSGDNQ IRNARPRVDA 300 RGRNQLLPRY WPRFTDQELQ HISGDKNSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF 360 PPISQPEGLP LKVQDSKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL LAGDIVTFSR 420 LEPEGKLVMG FRKASTSLQS DQENEANKTT NGVSAHAEVE LADPSSWSNV DKSGYIAKEA 480 LEDKSLIPKK RKNSNLGSKS KRLRIENEDV IELKVTWEEA QGLLRPPANH VPTVVVIEGF 540 EFEEYEDAPI LGKPTIYATG RAGEKIQWVQ CEDCFKWRKL PINALLPSKW TCSENSWDPE 600 RSLCSAAQEL TTEQLQDLLP RCNTVASKKL KAAKQDPDNI EVLEGLDTLA NLAILGEGES 660 LPSSAQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMMRREKK 720 QSDKEAETTR RKQHKGQLLV VDKPEDDTLS YCNAGSSSPN QKIEILELSD DDLNMTKSST 780 SPFKGQIDLN IQPEREDELS PGSDSGGMMK LLHDATARYH RQQRLSSSGG SEKSSGNGSQ 840 RPASEAGGGE PLGNGVNLES SNVVNLESSN HDSSNDCPAT LSIKPSASMT ATG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-63 | 312 | 437 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr000285.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR492070 | 1e-57 | KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376421.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A498JTS5 | 0.0 | A0A498JTS5_MALDO; Uncharacterized protein | ||||
STRING | XP_009376421.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |