PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000285.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 894aa    MW: 98636 Da    PI: 7.4786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000285.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-18334433198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L +gD+v+F++ +  e++lv+
  Pbr000285.1 334 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLLAGDIVTFSRLE-PEGKLVM 429
                  89**************************555566778***************9989999999***9.********************766.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Pbr000285.1 430 GFRK 433
                  7776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135903696IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.108.5E-30331440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-19331434IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-21332433No hitNo description
PROSITE profilePS5086310.983334435IPR003340B3 DNA binding domain
SMARTSM010191.8E-19334435IPR003340B3 DNA binding domain
PfamPF023622.2E-15334433IPR003340B3 DNA binding domain
PROSITE profilePS5105014.181562612IPR011124Zinc finger, CW-type
PfamPF074968.1E-12567609IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 894 aa     Download sequence    Send to blast
MSSSSSASKV CYNSECKEVK SEFPRKGWRL RTGEYCELCD RCYFAYEEGR FCETFHMNAA  60
GWRCCESCGK RVHCGCIVSS HAFTLLDPGG IECMTCARKN YVMTSNPAWP TSMFFHSPLS  120
ERLKDLSTKN WTQLAGSGPV PWRQAPSLFN SSIPSSELHT RVPHEVDGST GINKLNASER  180
IFVSTLEKKK VEEFSERLMK VNLSIGTQQS LENGIGNPGI NHEEKSSSCL NISQQSASLK  240
EEPSTPQFVP YGSPSETNPQ LGVTGTNLRP IAPLAKNYNG NGVESSGDNQ IRNARPRVDA  300
RGRNQLLPRY WPRFTDQELQ HISGDKNSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF  360
PPISQPEGLP LKVQDSKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL LAGDIVTFSR  420
LEPEGKLVMG FRKASTSLQS DQENEANKTT NGVSAHAEVE LADPSSWSNV DKSGYIAKEA  480
LEDKSLIPKK RKNSNLGSKS KRLRIENEDV IELKVTWEEA QGLLRPPANH VPTVVVIEGF  540
EFEEYEDAPI LGKPTIYATG RAGEKIQWVQ CEDCFKWRKL PINALLPSKW TCSENSWDPE  600
RSLCSAAQEL TTEQLQDLLP RCNTVASKKL KAAKQDPDNI EVLEGLDTLA NLAILGEGES  660
LPSSAQATTK HPRHRPGCSC IVCIQPPSGK GPKHKQTCTC NVCLTVKRRF RTLMMRREKK  720
QSDKEAETTR RKQHKGQLLV VDKPEDDTLS YCNAGSSSPN QKIEILELSD DDLNMTKSST  780
SPFKGQIDLN IQPEREDELS PGSDSGGMMK LLHDATARYH RQQRLSSSGG SEKSSGNGSQ  840
RPASEAGGGE PLGNGVNLES SNVVNLESSN HDSSNDCPAT LSIKPSASMT ATG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-633124372127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000285.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-57KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376421.10.0PREDICTED: B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A498JTS50.0A0A498JTS5_MALDO; Uncharacterized protein
STRINGXP_009376421.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1