PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 240aa MW: 27392.8 Da PI: 8.2094 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 7e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++lv +++++G +W+ ++ g+ R++k+c++rw +yl Pbr000261.1 16 KGPWSPEEDQKLVVYIQRYGIWNWSQMPEPAGLARSGKSCRLRWVNYL 63 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.9e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++++++ G++ W++Ia++++ gRt++++k++w +++ Pbr000261.1 69 RGNFSKDEEETILELHQAIGNR-WSAIAARLP-GRTDNEIKNHWKTHM 114 89********************.*********.***********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.979 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.59E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-9 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-7 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.226 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-10 | 71 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-26 | 71 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAKRTQRCEK TVAMKKGPWS PEEDQKLVVY IQRYGIWNWS QMPEPAGLAR SGKSCRLRWV 60 NYLRPDIKRG NFSKDEEETI LELHQAIGNR WSAIAARLPG RTDNEIKNHW KTHMKKRFKA 120 AIESLHEEAK GFGDKEASKN KLSETEQLFL VDEDTRASSS KMETTSSTSA PSRLFCPVWE 180 FDDRKGQIAE QSICASGVTF GDLQSLDSQV WQQEPIFPCD SYINHATSDY WVSLINKTG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 14 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000261.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074469 | 0.0 | DQ074469.1 Malus x domestica MYB21 mRNA, complete cds. | |||
GenBank | KC691248 | 0.0 | KC691248.1 Malus x domestica MYB transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373022.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q7XBH4 | 8e-57 | MYB4_ORYSJ; Transcription factor MYB4 | ||||
TrEMBL | Q2LME3 | 1e-151 | Q2LME3_MALDO; MYB transcription factor | ||||
STRING | XP_009373022.1 | 1e-180 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 4e-55 | myb domain protein 74 |
Publications ? help Back to Top | |||
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