PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr000228.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 440aa    MW: 47471.2 Da    PI: 4.7427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr000228.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.44e-06323367554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +n   + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Pbr000228.1 323 NNFTTKVRKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 367
                  5666688999999***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-13317386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.33E-6317372No hitNo description
PROSITE profilePS5088813.275318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-9321377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0018324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAEEFQARIC GGNSWWSSSR HVLAASPCSV GFNDHMGGFG YPNDMVDIKA TRSSCGEINN  60
LVSDDHDGGD HSNSIANFDQ YQDVQKPDHD STLQMIGFGL SSSLSSTPSD FNQALLLRSG  120
SGRGESNFHN SMLQEDMGMN TKLNTGALGD EESSSLINVF KPMNQDFSLD QLGSPSSSGF  180
PISSSSSAAN SYGFSSALML QTLFDSEPVP QTQPQQSVFN NNQFSNGSLL SSSPTSNCWP  240
PRYSPNSCLR PSALPKQLQP VVGGGSSLHF SNNISTPFWN APAPAALNQD NTIRSSNDLF  300
SSSQAQYTTP SLSPFHEKKP NSNNFTTKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA  360
IEYIKFLHDQ VSVLSTPYMK NGAPMQQQQG TDKMEEASEG AQQDLQSLGL CLVPISSTFP  420
VANETTADFW TPSFGATFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317330KKPNSNNFTTKVRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr000228.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505604.10.0PREDICTED: transcription factor bHLH112 isoform X1
TrEMBLA0A498JZ720.0A0A498JZ72_MALDO; Uncharacterized protein
STRINGXP_009369342.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-46bHLH family protein