PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr000207.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26121.7 Da PI: 6.2946 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2.1e-11 | 82 | 128 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + +K +K++iL Av+ + +L Pbr000207.1 82 KACREKMRRDRLNDRFVELSSILEPG---RPPKTDKVAILGDAVRMVTQL 128 678**********************8...89**************99988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.722 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-9 | 81 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.67E-8 | 81 | 129 | No hit | No description |
SMART | SM00353 | 1.2E-8 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-12 | 83 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-10 | 84 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MGSPPQNPNW VFDYGVIEDI LVPGGELPSL DPPGFSWPDH SFAGPTAPST EFDDSFGNPD 60 SMKETGLRKR ARTGSSSVSG SKACREKMRR DRLNDRFVEL SSILEPGRPP KTDKVAILGD 120 AVRMVTQLRG EALQLKESSA NLQETINELK AEKNELRDEK QRLKVEKDNI ERQIKALGTQ 180 PSFLPHPAAI PTPFSAPGQV VGGKMMPFVG YPGMSMWQFM PPAAVDTSQD HVLRPPVA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 66 | 72 | LRKRART |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr000207.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366840.1 | 1e-175 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 6e-91 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A498JW76 | 1e-144 | A0A498JW76_MALDO; Uncharacterized protein | ||||
TrEMBL | M5WIN3 | 1e-144 | M5WIN3_PRUPE; Uncharacterized protein | ||||
STRING | XP_009366840.1 | 1e-175 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-93 | bHLH family protein |