PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr000203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 19859.7 Da PI: 7.7574 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.5e-12 | 54 | 160 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS..............-EEEEEE..EEETTEEEE-TTHH.HHHHHH CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg..............rsWevkliyrkksgryvltkGWk.eFvkan 72 k l +sd ++++rl +pk+ +++h ++k + ++k+ +++++ y+l +GW+ eFv Pbr000203.1 54 KRLATSDLGELSRLLMPKEAVRKHimsylddklakmvDSK-------------EglpvtvvdwdtcnrHELTFKH--WNSGDFYILNGGWRpEFVVRR 136 78899*******************8876655555543333.............3355555555558566777777..*************879***** PP T--TT-EEEEEE-SS.SEE..EEE CS B3 73 gLkegDfvvFkldgr.sefelvvk 95 gLke+D + ++ld++ ++ ++ ++ Pbr000203.1 137 GLKENDEIGLYLDWDwKTSKYIFR 160 *************99888777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-16 | 49 | 165 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.93E-12 | 50 | 161 | No hit | No description |
SMART | SM01019 | 0.0038 | 52 | 162 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-12 | 53 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-9 | 54 | 160 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKLEEEDHHP SKVRLFGIGL GSSLNDLRGG HELSTDLYLW DPTWDYNSIW KIRKRLATSD 60 LGELSRLLMP KEAVRKHIMS YLDDKLAKMV DSKEGLPVTV VDWDTCNRHE LTFKHWNSGD 120 FYILNGGWRP EFVVRRGLKE NDEIGLYLDW DWKTSKYIFR FSVLQRTK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr000203.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352883.1 | 1e-121 | PREDICTED: B3 domain-containing protein At2g33720-like | ||||
TrEMBL | A0A498K0T1 | 1e-112 | A0A498K0T1_MALDO; Uncharacterized protein | ||||
STRING | XP_009352883.1 | 1e-120 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF579 | 12 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 4e-18 | B3 family protein |