PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf16358g00003.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HSF
Protein Properties Length: 224aa    MW: 25899.5 Da    PI: 9.6019
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf16358g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.91.3e-32261182103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k ye++e+++++ +isws +g+sf+++d+ ++ +++Lp+yFkh n++SF+ QLn YgFkkv +++         weF+h++F
  Peaxi162Scf16358g00003.1  26 FLMKAYEMVEEPSTSAIISWSPSGTSFIIWDHLKLCSELLPRYFKHANLSSFIYQLNNYGFKKVGTRQ---------WEFEHNWF 101
                               9***************************************************************9988.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                               ++gkk+ll +i r++++
  Peaxi162Scf16358g00003.1 102 QAGKKHLLPNIIRRRNK 118
                               **********9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-3319109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.16E-2922115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-4322115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.2E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-172649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAMNNINQFS TGENINGGRE SGVTPFLMKA YEMVEEPSTS AIISWSPSGT SFIIWDHLKL  60
CSELLPRYFK HANLSSFIYQ LNNYGFKKVG TRQWEFEHNW FQAGKKHLLP NIIRRRNKNL  120
KVQKDCYQET YYRGVEAELR SQRDLNTTLI SGIEKLKEKQ DDLANGIASL KEYMENEDAK  180
FRKLLCSLAK PLKQAAIQHT EEERSEVITK KRKVEDTSKG ATKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-222111515120Heat shock factor protein 1
5d5u_B4e-222111524129Heat shock factor protein 1
5d5v_B4e-222111524129Heat shock factor protein 1
5d5v_D4e-222111524129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454588.11e-99PREDICTED: heat stress transcription factor A-9-like
TrEMBLA0A1S3YR273e-98A0A1S3YR27_TOBAC; heat stress transcription factor A-9-like
STRINGXP_009594956.12e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13740910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-43heat shock transcription factor A2