PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf03709g00005.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 385aa    MW: 43429.1 Da    PI: 6.1164
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf03709g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-083283612154
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               k +yp++e++++L +++gL+ +q+ +WF N+R +
  Peaxi162Scf03709g00005.1 328 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 361
                               469*****************************87 PP
2ELK292.5e-10282303122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELKh+L+++Y+++++++++E++
  Peaxi162Scf03709g00005.1 282 ELKHELKQGYKEKIVDIREEIL 303
                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.6E-19116160IPR005540KNOX1
PfamPF037903.4E-17118159IPR005540KNOX1
SMARTSM012566.4E-25169225IPR005541KNOX2
PfamPF037911.1E-18175224IPR005541KNOX2
PfamPF037898.8E-7282303IPR005539ELK domain
SMARTSM011886.1E-4282303IPR005539ELK domain
PROSITE profilePS512139.969282302IPR005539ELK domain
PROSITE profilePS5007111.726302365IPR001356Homeobox domain
SMARTSM003894.7E-11304369IPR001356Homeobox domain
SuperFamilySSF466895.13E-16304368IPR009057Homeodomain-like
CDDcd000864.85E-11305366No hitNo description
Gene3DG3DSA:1.10.10.603.1E-25309366IPR009057Homeodomain-like
PfamPF059201.0E-17322361IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAFQDHFSQE MALQQHHQQQ QQQNAAVLRS MLPDSPHDSR KSPQATWLLR QNNFLHLQTS  60
NSDSSTSNQW LSPTAAATAA GGGGELSKIS QHSGDDHNNE NTNEIEETGE KSWERQKCKA  120
DILNHPLYDQ LLSAHVSCLR IATPVDQLPR IDAQLAQSQN VVAKYSVLGQ GQPPLDDKDL  180
DQFMTHYVLL LSSFKEQLQQ HVRVHAMEAV MACWELEQSL QSLTGVAPGE GTGATMSDDD  240
DDQADSDTNF LDGGFDGPDS MGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE  300
EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK  360
RNWHSNPSTS TSQKSKRKSA GEIKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-12305369872Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776890.0KJ477689.1 Solanum tuberosum class II knox protein (HOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256025.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223000.0LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A1J6IDZ70.0A0A1J6IDZ7_NICAT; Homeobox protein knotted-1-like let12
STRINGXP_009770424.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-155KNOTTED1-like homeobox gene 3