PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf02980g00004.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GRAS
Protein Properties Length: 138aa    MW: 15290.3 Da    PI: 4.2136
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf02980g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS22.41.4e-072341345
                      GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayf 45
                              +sg+le+a+ +L ++s+laspdgd+mqR+a+y 
  Peaxi162Scf02980g00004.1  2 ASGSLENANIALDHISHLASPDGDTMQRIASYW 34
                              6899***************************95 PP
2GRAS91.71.2e-285313791179
                      GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                               + ++++++Nq I ea+e+e++vHi+D+++ ++lQW aLlq L++ pegp++lRiTg ++    +ke l ++++ L++ A++l+ p
  Peaxi162Scf02980g00004.1  53 IVVAFMVTNQVIIEAMEEEKMVHIVDLNAAEPLQWQALLQDLSAHPEGPAHLRITGAHQ----QKEVLDQMAQVLTEEAANLDFP 133
                               56899******************************************************....9********************* PP

                      GRAS 176 fefn 179
                               f+fn
  Peaxi162Scf02980g00004.1 134 FQFN 137
                               ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.6431138IPR005202Transcription factor GRAS
PfamPF035144.7E-5234IPR005202Transcription factor GRAS
PfamPF035144.0E-2653137IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MASGSLENAN IALDHISHLA SPDGDTMQRI ASYWPGLYKA LQLTKLSVVS EDIVVAFMVT  60
NQVIIEAMEE EKMVHIVDLN AAEPLQWQAL LQDLSAHPEG PAHLRITGAH QQKEVLDQMA  120
QVLTEEAANL DFPFQFNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-18113630192Protein SCARECROW
5b3h_A9e-19113629191Protein SCARECROW
5b3h_D9e-19113629191Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754512e-79HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755242e-79HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061792.12e-71scarecrow-like protein 3
SwissprotQ9LPR83e-54SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3Q7JDZ14e-70A0A3Q7JDZ1_SOLLC; Uncharacterized protein
TrEMBLM1A0984e-70M1A098_SOLTU; Uncharacterized protein
STRINGSolyc12g099900.1.17e-71(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1604136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-56scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]