PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01969g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 285aa    MW: 32747.5 Da    PI: 6.4391
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01969g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.3e-141562148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W+++Ed +l++++ ++G g+W++++   g+ R +k+c++rw +yl
  Peaxi162Scf01969g00021.1 15 KGLWSPDEDHKLKNYILEHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                              678*******************************************97 PP

2Myb_DNA-binding452.5e-1468113148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+++ eE+e +  ++ + G++ W+  a++++ gRt++++k++w++yl
  Peaxi162Scf01969g00021.1  68 RGAFSIEEEETIMTLHGMIGNK-WSQMAQHLP-GRTDNEIKNHWHSYL 113
                               899*******************.*********.************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-21865IPR009057Homeodomain-like
PROSITE profilePS5129416.3531062IPR017930Myb domain
SuperFamilySSF466891.31E-2713109IPR009057Homeodomain-like
SMARTSM007172.7E-91464IPR001005SANT/Myb domain
PfamPF002492.9E-131562IPR001005SANT/Myb domain
CDDcd001676.45E-81862No hitNo description
PROSITE profilePS5129424.00863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2466117IPR009057Homeodomain-like
SMARTSM007172.6E-1167115IPR001005SANT/Myb domain
PfamPF002494.7E-1368113IPR001005SANT/Myb domain
CDDcd001675.78E-774113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MRCKPVESPK KKHRKGLWSP DEDHKLKNYI LEHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGA FSIEEEETIM TLHGMIGNKW SQMAQHLPGR TDNEIKNHWH SYLKKRVAKI  120
AENEAKSQNM DGLSSSSLKL TSRNSSLDSF AQIEGSLTDT DQSISQIEFL KEPRESNFQK  180
VLFAEWFTLD QFKSQDFQNS GNSNHSRNNN FGYNKSDFQD GFIHGLFMSE GTYGADINIP  240
GVLNNETVDD MFQASQFKFE DHMSANGFEE FISDEFNITE DVMYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770980.11e-152PREDICTED: transcription factor MYB46-like
RefseqXP_016471228.11e-152PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1S4A3L11e-151A0A1S4A3L1_TOBAC; transcription repressor MYB6-like
TrEMBLA0A1U7W9R41e-151A0A1U7W9R4_NICSY; transcription factor MYB46-like
STRINGXP_009770980.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.16e-61myb domain protein 19