PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01819g00004.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 471aa    MW: 52836.1 Da    PI: 7.125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01819g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-19140186148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT+eEd +lv++vkq+G+++W+ Ia+ m  gR +kqc++rw+++l
  Peaxi162Scf01819g00004.1 140 KGQWTEEEDRKLVKLVKQFGMRRWAQIAENMV-GRAGKQCRERWHNHL 186
                               799*****************************.*************97 PP
2Myb_DNA-binding57.23.8e-18192234145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               +++W+++E+++lv+a++q G++ W+ Ia++++ gRt++++k++w+
  Peaxi162Scf01819g00004.1 192 KDAWSEQEELILVEAHQQIGNK-WAEIAKKIP-GRTENSIKNHWN 234
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.314135190IPR017930Myb domain
SMARTSM007171.7E-17139188IPR001005SANT/Myb domain
SuperFamilySSF466893.13E-30139233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-27141193IPR009057Homeodomain-like
PfamPF139212.4E-18143200No hitNo description
CDDcd001671.09E-16143186No hitNo description
PROSITE profilePS5129420.346191241IPR017930Myb domain
SMARTSM007175.0E-16191239IPR001005SANT/Myb domain
CDDcd001673.38E-12194237No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20194239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MEGGSGGDGS AYQPYQNIPT NLSIFQQGPP LIAINRYLLS HQSQFSSQQS VNNQSIFSQC  60
GGLCDFSSYS GISHANGISW SSVPEPSFVD RIFLSHEQNG LHWNNQENGI AEEMISSQQN  120
SKEAGKKAKE GPSSTTVLVK GQWTEEEDRK LVKLVKQFGM RRWAQIAENM VGRAGKQCRE  180
RWHNHLRPDI KKDAWSEQEE LILVEAHQQI GNKWAEIAKK IPGRTENSIK NHWNATKRRQ  240
HSRRNKFKKQ EKDGQNDSKY RSNILRDYIR SKYFSDNSPP TASTPSNSIS TNATPPYSDD  300
DSPSLLTRQT YDEEMNFMQN LFGENSLVEN NGKVAEAMEA KTRQCPFDNK SSSSSCPFNS  360
LVAGYTKSDN QIVNDNSEYG YNMYMADHYS KVTQQSDSDQ CSGIYLSYLL DHSTSANSLP  420
CSGSIGYGNM NAGTLVNQGS SSSKGNKEVD LMEIVSSTLY RQQTSHTTFF N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-441372401104C-Myb DNA-Binding Domain
1msf_C8e-441372401104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754484e-37HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755214e-37HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619843.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A1J6IRQ30.0A0A1J6IRQ3_NICAT; Transcription factor myb98
STRINGXP_009619843.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.19e-69myb domain protein 119